Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M07
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    84   2e-17
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.17 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    27   2.7  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   3.6  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    26   4.7  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   4.7  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   6.2  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
 Frame = +3

Query: 72  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 248
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 249 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 422
            R    +     K  +KPAK L R+   A A  R  YK +   +    YR DL K ++ R
Sbjct: 61  PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119

Query: 423 ASAILRSQRP 452
           ASAIL SQRP
Sbjct: 120 ASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 275 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 129
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 51  PNTTCSQCVRRQK 13
           PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 485 GCGCLSLFCFDGPLG 441
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 136 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 26
           FFT ++L     +  S   I     Y Y  HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +3

Query: 111 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 287
           NN ++L+KK+   K     P+ V     +  NG+  K  A   V  P RK     +   +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243

Query: 288 ATRKPAKNL 314
             +    NL
Sbjct: 244 CNKAEDCNL 252


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 84  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 191
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,760
Number of Sequences: 5004
Number of extensions: 42874
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)