Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M06
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.8  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   6.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.7  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 680 PPQQLPMPGTGRHVERPRIDEERTTFL 600
           P Q++P P    H E P   EER  F+
Sbjct: 16  PHQEVPPPFGYYHEEPPLFYEERPDFV 42


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 463 GMSMSKRCIFLCCAK 419
           G  +SK+ IF CC+K
Sbjct: 96  GYELSKQEIFNCCSK 110


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 773 EQRVSPGDVPRGAVPGG 723
           +Q +  GD+P  A PGG
Sbjct: 243 DQDMDEGDLPLPAAPGG 259


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 683 RPPQQLPMPGTGRHV 639
           RPP+++P P  GR V
Sbjct: 659 RPPKKIPTPYGGRLV 673


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 683 RPPQQLPMPGTGRHV 639
           RPP+++P P  GR V
Sbjct: 659 RPPKKIPTPYGGRLV 673


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 683 RPPQQLPMPGTGRHV 639
           RPP+++P P  GR V
Sbjct: 659 RPPKKIPTPYGGRLV 673


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 683 RPPQQLPMPGTGRHV 639
           RPP+++P P  GR V
Sbjct: 659 RPPKKIPTPYGGRLV 673


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,390
Number of Sequences: 336
Number of extensions: 4434
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)