Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M06
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 224 6e-59
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 170 1e-42
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 124 6e-29
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 53 2e-07
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.029
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 35 0.066
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 30 2.5
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 29 4.3
05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048 29 4.3
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 29 5.7
03_06_0668 + 35412258-35412527,35412635-35412728,35412853-354129... 29 5.7
07_03_1411 + 26379556-26379620,26379883-26379940,26380057-263802... 28 7.6
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126... 28 10.0
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 28 10.0
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 224 bits (548), Expect = 6e-59
Identities = 122/255 (47%), Positives = 155/255 (60%), Gaps = 25/255 (9%)
Frame = +3
Query: 108 FNLALIQLSVGPNKSKHXAQAVKEIHLAKXXGAQLVALPECFNSPYGTKYFDEYAEEVPS 287
F +AL QLSV +K+++ A+A + I A GA+LV LPE +N PY F EYAE++ +
Sbjct: 46 FKVALCQLSVTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYSNDSFPEYAEDIEA 105
Query: 288 GETSRA----LSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDI 455
G + +S+ ER KLYNTC V+ G+L +HRK+HLFDI
Sbjct: 106 GGDAAPSFSMMSEVARSLQITLVGGSISERSGNKLYNTCCVFGSDGELKGKHRKIHLFDI 165
Query: 456 DIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 635
DIP KITFKES+ L+AG +T D +IGIGICYD+RF E+A L A G LL YPGA
Sbjct: 166 DIPGKITFKESKTLTAGQDLTVVDTDVGRIGIGICYDIRFQELAMLYAARGAHLLCYPGA 225
Query: 636 FNMTTGPRHWELLGRARATD---------------------XQLWVALVSPARDSAAGYV 752
FNMTTGP HWELL RARA D QL+VA +PARD++AGY+
Sbjct: 226 FNMTTGPLHWELLQRARAADNQKLIIHVANLVVSNSNRTFCYQLFVATCAPARDTSAGYI 285
Query: 753 AWGHSLLVXPWGQVV 797
AWGHS LV P+G+V+
Sbjct: 286 AWGHSTLVGPFGEVI 300
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 170 bits (414), Expect = 1e-42
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 4/199 (2%)
Frame = +3
Query: 213 VALPECFNSPYGTKYFDEYAEEVPSGETSRA--LSKXXXXXXXXXXXXXXPERYEKKLYN 386
V E +N PY + + E++ G + LS+ PER +L+N
Sbjct: 16 VLFQEIWNCPYSMETLPSHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPERSSGRLFN 75
Query: 387 TCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYD 566
TC V G++ A+HRK+HLF+IDIP ITF+ES+ +AG + T D +IGIGIC+D
Sbjct: 76 TCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEPTIVDTDVGRIGIGICHD 135
Query: 567 LRFPEMAHLMAKEGCSLLIYPGAFNMTTGPRHWELLGRARATDXQLWVALVSPARD--SA 740
+RFPE+A L G L+ YP AFNM+TG W+L+ ++RA D QL+V SPARD +
Sbjct: 136 IRFPELAMLYRSRGAHLICYPSAFNMSTGQLLWDLMQKSRAVDNQLFVVTCSPARDPNAE 195
Query: 741 AGYVAWGHSLLVXPWGQVV 797
+ Y+ WGHS L+ P+G+V+
Sbjct: 196 SDYMIWGHSSLIGPFGEVI 214
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 124 bits (300), Expect = 6e-29
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Frame = +3
Query: 381 YNTCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGIC 560
YNT + DD+G++ + +RK+HLFD+D+P + +KES +AGD + + D ++G+ +C
Sbjct: 176 YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVC 235
Query: 561 YDLRFPEMAH-LMAKEGCSLLIYPGAFNMTTGPRHWELLGRARATDXQLWVALVSPARDS 737
YDLRFPE+ L K +L+ P AF TG HWE+L RARA + Q +V + A
Sbjct: 236 YDLRFPELYQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKH 295
Query: 738 AAGYVAWGHSLLVXPWGQVV 797
++G S+++ PWG V+
Sbjct: 296 NEKRESYGDSIIIDPWGTVI 315
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 53.2 bits (122), Expect = 2e-07
Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 18/248 (7%)
Frame = +3
Query: 111 NLALIQLSVGPNKSKHXAQAVKEIHLAKXXGAQLVALPECFNSPY--GTKYFDEYAEEVP 284
++A +Q + +S++ A + I A GA +V + E F Y + D + P
Sbjct: 12 SVAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDFFQRAKP 71
Query: 285 -SGETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDIDI 461
G + + E YN+ + D G L +RK H I
Sbjct: 72 YKGNPTIIRFQKLAKELEVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSH-----I 126
Query: 462 PNKITFKESEVLSAGDK-ITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGAF 638
P+ ++E + GD +F + IG+GIC+D FPE A M +G +L YP A
Sbjct: 127 PDGPGYQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQGAEILFYPTAI 186
Query: 639 ------NMTTGPRHWE--LLGRARATDXQLWVALVSPARDSA------AGYVAWGHSLLV 776
N HW+ + G A A L VA R++ + +G+S +
Sbjct: 187 GSEPQDNNLDSREHWKRVMQGHAGANLVPL-VASNRIGRETVETEHGESTITFFGNSFIA 245
Query: 777 XPWGQVVE 800
P G++V+
Sbjct: 246 GPTGEIVK 253
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 36.3 bits (80), Expect = 0.029
Identities = 28/92 (30%), Positives = 40/92 (43%)
Frame = +3
Query: 360 ERYEKKLYNTCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGS 539
ER LYNT +D GK L +HRK+ +P + + G I +D
Sbjct: 133 ERVGYTLYNTVLFFDPLGKYLGKHRKV------MPTGLE-RVFWGFGDGSTIPVYDTPIG 185
Query: 540 KIGIGICYDLRFPEMAHLMAKEGCSLLIYPGA 635
KIG IC++ R P + M +G + P A
Sbjct: 186 KIGAVICWENRMPLLRTAMYAKGVQIYCAPTA 217
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 35.1 bits (77), Expect = 0.066
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 1/116 (0%)
Frame = +3
Query: 378 LYNTCTVWDDTGKLLAQHRKMHLFDIDIPNKITFKESEVLSAGDK-ITSFDFLGSKIGIG 554
++NT V + G ++ HRK H IP F ES G+ F+ KIG+
Sbjct: 204 VWNTAVVIGNHGNIIGIHRKNH-----IPRVGDFNESTYYMEGNTGHPVFETAYGKIGVN 258
Query: 555 ICYDLRFPEMAHLMAKEGCSLLIYPGAFNMTTGPRHWELLGRARATDXQLWVALVS 722
ICY P G ++ P A W + R A +V ++
Sbjct: 259 ICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSIN 314
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 545 WHRHMLRSEVP*DGTSDGQGRLFSPHLSGGVQHDDRSPALGAAGEGACYRPXAVGGAREP 724
W R+ R E G +G +P G + A A GEG C R A+ G+ +
Sbjct: 583 WRRNE-RGEDNERGEDNGNDDDAAPRGVDGASGETTMAANAAVGEGPCLRSSALSGSSKV 641
Query: 725 RPGQ 736
RP +
Sbjct: 642 RPDE 645
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Frame = +3
Query: 549 IGICYDLRFPEMAHLMAKEGCSLLIYPGAFNMTTGPRHWELLGRAR--ATDXQLWVALVS 722
+G C + +A +A GCS++ Y G + G R + G + ++W L+
Sbjct: 8 LGACLAVMLVVLAAAVAGVGCSIVSYDGRSLILDGERRIVISGSIHYPRSTPEMWPDLIK 67
Query: 723 PARDSAAG----YVAW-GH 764
A++ YV W GH
Sbjct: 68 KAKEGGLNAIETYVFWNGH 86
>05_02_0104 - 6638018-6638599,6639284-6639632,6641843-6642048
Length = 378
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +2
Query: 647 DRSPALGAAGEGACYRP---XAVGGAREPRPGQRR 742
D + +LGAAG G+ RP A G R P PG+RR
Sbjct: 343 DEAASLGAAGSGS-PRPDPTPAAGPRRRPAPGRRR 376
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Frame = +3
Query: 477 FKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLMAKEGCSLLIYPGAFNMTTGP 656
F ++L G+ + D + KI ++L + H + ++G + I G G
Sbjct: 396 FASRQLLLLGEMLDFSDTMNRKIASSFLHELLTRPLEHEVDEDGNKMAIGDGV--SLGGD 453
Query: 657 RHW-----ELLGRARAT--DXQLWVA-----LVSPARDSAAGYVAWGHSLLV 776
+ W EL R A+ + ++ VA L P R+ A ++ W H L V
Sbjct: 454 KEWAKAVAELAKRVHASVGEFEMVVATVVEELARPCRERTADFMHWMHCLAV 505
>03_06_0668 +
35412258-35412527,35412635-35412728,35412853-35412968,
35414877-35414921,35415471-35415680
Length = 244
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 303 LCSSPPMALPLHIHQNTWFRKES*ST 226
+C SPP LPL H+ FR E+ T
Sbjct: 18 MCCSPPAFLPLRAHRRRIFRAEAMKT 43
>07_03_1411 +
26379556-26379620,26379883-26379940,26380057-26380200,
26380367-26380426,26380789-26380956,26381043-26381117
Length = 189
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 718 TSATHSXWSVARALPSSSQCRGPVVMLNA 632
T+ATHS S A+ + CR P V+L +
Sbjct: 62 TAATHSGHSSTEAITDKALCRAPPVLLQS 90
>04_04_0795 -
28111155-28111649,28111747-28112405,28112499-28112635,
28112747-28113093
Length = 545
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 702 LWVALVSPARDSAAGYVAWG 761
+WVA++ PA+ +A Y WG
Sbjct: 490 MWVAIMRPAKGTAMWYTNWG 509
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 27.9 bits (59), Expect = 10.0
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Frame = +3
Query: 246 GTKYFDEY---AEEVPSGETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTGK 416
G + F +Y A EVP E +R + E Y LY + +D G+
Sbjct: 98 GKEEFRKYHAAAIEVPGPEVTRLAAMAGKYKVFLVMGVIEREGYT--LYCSVLFFDPLGR 155
Query: 417 LLAQHRKMHLFDIDIPNKITFKESEVLSAGDKITSFDFLGSKIGIGICYDLRFPEMAHLM 596
L +HRK+ ++ +I + + G I +D KIG IC++ + P + +
Sbjct: 156 YLGKHRKLMPTALE---RIIWGFGD----GSTIPVYDTPLGKIGALICWENKMPLLRTAL 208
Query: 597 AKEGCSLLIYPGA 635
+G + P A
Sbjct: 209 YGKGIEIYCAPTA 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,112,063
Number of Sequences: 37544
Number of extensions: 585196
Number of successful extensions: 1600
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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