Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M06
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    26   0.47 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    24   1.4  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 217 PCRSASTLLTEPSILMNMQRKCHRGRRAELYPKPLQ 324
           PC   +T LTEP  L N  R+ +    A LYP  +Q
Sbjct: 194 PCNVLATSLTEPYTLRNYGRRINCTYVA-LYPSSVQ 228


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = -1

Query: 644 HVERPRIDEERTTFLGHQMCHLREPQIVTYADANL*SQKVERCDLIARRENLGFFERYLV 465
           H E+ ++ EERT+   +     RE +     ++    ++  +     RRE     E  ++
Sbjct: 256 HNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRRERGRSREHRII 315

Query: 464 RNVYVEEMHLPVLR*EFP 411
            + Y+E++ +PV    FP
Sbjct: 316 PSHYIEQIPVPVYYGNFP 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,330
Number of Sequences: 438
Number of extensions: 5628
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)