Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M05
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 30 0.35
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 29 0.61
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 1.1
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||... 28 1.4
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 27 3.3
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 27 3.3
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 4.3
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 5.7
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 7.6
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.6
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.6
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 30.3 bits (65), Expect = 0.35
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +1
Query: 172 AVKNKYH-KGVKAYTDERWTECIAQFEESISLYRVYRK-RIINCRLKCNRNQYNSEIQNN 345
A+ N YH G A+T + F +I + VY+K + I + K +R++ +EI NN
Sbjct: 383 ALSNLYHLMGYSAFTGV--AASVILFPCNIIVANVYKKFQSILMKNKDSRSKLMTEIINN 440
Query: 346 IEDLKIY 366
I +K+Y
Sbjct: 441 IRSIKLY 447
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.5 bits (63), Expect = 0.61
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Frame = +1
Query: 220 RWTECIAQFEESISLYRVYRKRIINCRLKCNRNQYNSE---IQNNIEDLKIYELLLKKTV 390
R+T + ++ LYR+ R+ ++ RLK + N+ + I E L + +L +
Sbjct: 732 RFTNWLGNNSKTNKLYRMLREIQVHMRLKVSANKLDLRQHYIPILYESLPV-KLSTGHSD 790
Query: 391 CLKQCIESVADTHL-QEEFQDIIPIMSARKPFEYLHVCYFQMNALPKAASAAYTFHV--- 558
+ + IE + + +L +E+F I ++ E L M +P AA +A+T
Sbjct: 791 VVPEIIELMDEYYLNREDFDSITELVLPADAGEKL------MKTIPTAAKSAFTRKYNSS 844
Query: 559 GHPDDITMLNNVKYYSQQPEVDVNEIEDLL-IENFMIYYKNGKDAYNKND 705
HP ++V + +V ++ED + E+ M+ + +A N+ D
Sbjct: 845 SHPIAFFGSSDVLPMKGSAQREVPDVEDAIEAEDEMLEEASDSEAANEED 894
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 283 RIINCRLKCNRNQYNSEIQNNIEDLKIYELLLKKTVCLKQCIESVADTHLQEEFQDIIPI 462
R++ ++CN SE+Q N + + + +K + + S +T L E+ Q P+
Sbjct: 1184 RLLEALVRCNMTTQASELQRNFAN--VIGTIGEKVIPILSVPVSTFETALGEQPQ--APV 1239
Query: 463 MSARKPFEYLHV 498
+ KPFE L +
Sbjct: 1240 VPNVKPFEKLSI 1251
>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 328 SEIQNNIEDLKIYELLLKKTVCLKQCIESVADTHLQEEFQDIIPIMSARKPFEYL 492
+ +QNN+ + + LLK +C + +A E F +I P ++ + ++ L
Sbjct: 184 ASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFASTREYQLL 238
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 208 YTDERWTECIAQFEESISLYRVYRKRIINC---RLKCNRNQYNSEIQNNI 348
++DER T+ FE+ S YR+ R I + R+Q NS N I
Sbjct: 73 FSDERVTQAFGSFEDFCSKYRLQCPRAIKRIQEGISDERSQSNSTFSNAI 122
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 556 VGHPDDITMLNNVKYYSQQPEVDVNEIEDLLIENFMIYYKNG 681
+ +PDDI+ + N +++P + N +DL E + +YK G
Sbjct: 107 IKYPDDISFVENQAVTTKEPIIIENVEDDLARE--LAFYKQG 146
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 292 NCRLKCNRNQYNSEIQNNIEDLKIYELLLKKTVCLKQCIESVADTH 429
NC+ + N + I ++ D K+ +LLL + L+ C++SV+ H
Sbjct: 40 NCKKRGIPNLCPNGILVSVSD-KLIKLLLSRIDTLQNCVKSVSPNH 84
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 673 KNGKDAYNKNDWEKTITNFEEAIKDYFSV 759
KNGK DWE T+ +E +K+ V
Sbjct: 69 KNGKSNGIIQDWESTLYTWERGLKEKLQV 97
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 376 KAVHKFLNLQYYFVFLN-CIDF-CYI*VYS*LCVFYKLYIN 260
K +H+ L + F+FLN +D CY+ Y+ F +++N
Sbjct: 28 KIIHRLLYISIIFLFLNYVVDIVCYVKNYNGFSFFCWVFLN 68
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 280 KRIINCRLKCN--RNQYNSEIQNNIEDLKIY---ELLLKKTVCLKQCIE 411
KR N ++K R+Q+ +EI NNI +K+Y + L+K + L+ E
Sbjct: 420 KRFQNRQMKNKDARSQFMTEIINNIRSIKLYAWENIFLQKLLQLRNTRE 468
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +1
Query: 400 QCIESVADTHLQEEFQDIIPIMSARKP--FEYLHVC--YFQMNALPKAASAAYTFHVGHP 567
Q +V L+ + IP+ ARKP FE + ++ P A + + HP
Sbjct: 13 QSSSNVTSNQLENVDKSSIPLSKARKPSDFELNNSIEDAEKIKTYPAALRYIFALNSRHP 72
Query: 568 DDITMLNNVKYYSQQPEVDVNEIEDLLIENF 660
+ + L +K ++ E + + L+++F
Sbjct: 73 EKLQKLRKMKAMQERQERNWSLERQRLVQHF 103
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +1
Query: 562 HPDDITMLNNVKYYSQQPEVDVNEIEDLLIENFMIYYKNGKDAYNKNDWEKTIT 723
HP D L+ KY N+ D LI G D+Y+K W KT T
Sbjct: 13 HPKDCK-LHAKKYRGTLNSKGKND-NDCLIMCMRCRKVKGIDSYSKTQWSKTFT 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,557
Number of Sequences: 5004
Number of extensions: 59237
Number of successful extensions: 161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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