Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M05
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical...   118   5e-27
Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AL132862-21|CAB70232.1|  476|Caenorhabditis elegans Hypothetical
           protein Y73F8A.26 protein.
          Length = 476

 Score =  118 bits (284), Expect = 5e-27
 Identities = 54/204 (26%), Positives = 105/204 (51%)
 Frame = +1

Query: 196 GVKAYTDERWTECIAQFEESISLYRVYRKRIINCRLKCNRNQYNSEIQNNIEDLKIYELL 375
           G   YT+  W +C+A  + +I  +R Y+  +++CR KCNR Q      ++ +  K +E  
Sbjct: 31  GKNEYTERNWPDCVAFMKRAIDDFRQYQDDVVSCRRKCNR-QIKPATSSSPKIAKFHETS 89

Query: 376 LKKTVCLKQCIESVADTHLQEEFQDIIPIMSARKPFEYLHVCYFQMNALPKAASAAYTFH 555
            +  +CL +C + +   H   +   +   +  RKP++Y+H+CY+    L  A  +AYTF 
Sbjct: 90  -ETALCLLRCRKDMFGDHQSIKKMSVYHDLEERKPYQYMHICYYHQGELAMAVQSAYTFL 148

Query: 556 VGHPDDITMLNNVKYYSQQPEVDVNEIEDLLIENFMIYYKNGKDAYNKNDWEKTITNFEE 735
           V +PDD  +  ++ +Y  +     + + D+  ++    + NG +AY++ DW + +  FE 
Sbjct: 149 VANPDDKDIKQSLNWYMNRDGYSDDMLIDMERKDHEAKFINGVEAYDQQDWGRCVNEFES 208

Query: 736 AIKDYFSVENNCRAECELQPDXQI 807
           A++     +  CR  C+ + D  +
Sbjct: 209 ALEKSIIQDEKCRLLCQDKIDWSV 232



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
 Frame = +1

Query: 184 KYHKGVKAYTDERWTECIAQFEESISLYRVYRKRIINCRLKCNRNQYNSEIQNNIE-DLK 360
           K+  GV+AY  + W  C+ +FE ++    +  ++   CRL C      S +  N E D+ 
Sbjct: 186 KFINGVEAYDQQDWGRCVNEFESALEKSIIQDEK---CRLLCQDKIDWSVVDGNPEIDIL 242

Query: 361 IYELLLKKTVCLKQCIESVADTHLQEEFQDIIPIMSARKPFEYLHVCYFQMNALPKAASA 540
           +  +      C   C+  +A   +   +  +  + +A   FEYLH C+F+M    +AA  
Sbjct: 243 LASMRASVIRCEHNCLYKLA--RINGHY--VGHLFAAH--FEYLHFCHFKMQRGAEAAQT 296

Query: 541 AYTFHVGHPDDITMLNNVKYYSQQ 612
              + +   D   M  N  +Y +Q
Sbjct: 297 VANYLL-FDDSPLMRRNRYFYGKQ 319



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 658 FMIYYKNGKDAYNKNDWEKTITNFEEAIKDYFSVEN---NCRAECELQPDXQISS 813
           F  Y++ GK+ Y + +W   +   + AI D+   ++   +CR +C  Q     SS
Sbjct: 24  FEDYFQFGKNEYTERNWPDCVAFMKRAIDDFRQYQDDVVSCRRKCNRQIKPATSS 78


>Z30215-3|CAA82935.1|  325|Caenorhabditis elegans Hypothetical
           protein F40F12.3 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 181 NKYHKGVKAYTDERWTECIAQFEESISLYRV-YRKRIINCRLKCNRNQYNSEIQNNIEDL 357
           N  + GV+A   +  TEC+ + EE+  L+ +   KR++NC   C   + +   +      
Sbjct: 132 NNVYNGVEALIKDISTECM-ETEEARELFCLRINKRVVNCTGGCKPYKMSPSYRTPYISC 190

Query: 358 KIYELLLKKTVCLKQCIES 414
           K     LKK      C++S
Sbjct: 191 K-----LKKDETFLDCVDS 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,594
Number of Sequences: 27780
Number of extensions: 327416
Number of successful extensions: 904
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)