Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_M05
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    27   0.28 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           27   0.28 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +1

Query: 472 RKPFEYLHVCYFQMNALPKAASAAYT-FHVGHPDDITMLNNVKYYSQQPEVDVNEIEDLL 648
           R+P  + +  Y   +++ +  S     + V H DD  M+ +  + +     +  +++ +L
Sbjct: 433 RQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVL 492

Query: 649 IENFMIYYKNGKDAYNKNDWEKTITN 726
           I+ ++ +  NG    N   W +   N
Sbjct: 493 IDFWVSFVNNGVPNVNSVQWPRLNPN 518


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +1

Query: 472 RKPFEYLHVCYFQMNALPKAASAAYT-FHVGHPDDITMLNNVKYYSQQPEVDVNEIEDLL 648
           R+P  + +  Y   +++ +  S     + V H DD  M+ +  + +     +  +++ +L
Sbjct: 433 RQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVL 492

Query: 649 IENFMIYYKNGKDAYNKNDWEKTITN 726
           I+ ++ +  NG    N   W +   N
Sbjct: 493 IDFWVSFVNNGVPNVNSVQWPRLNPN 518


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 376 KAVHKFLNLQYYFVFLNCIDFCYI 305
           KAV  F+++   FVF+  +++C +
Sbjct: 305 KAVDAFMSVCTVFVFMALMEYCLV 328


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 64  KITPCFLPSLKVCTVQ 17
           K T CF PSL  C V+
Sbjct: 168 KTTACFEPSLDYCVVK 183


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 495 CLLFPNECFTKSCLSSIYISC 557
           CL +  +    S LSS YI C
Sbjct: 336 CLFYNTDFIIYSSLSSFYIPC 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,731
Number of Sequences: 438
Number of extensions: 4461
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)