Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_M02
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 113 2e-26
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 113 3e-26
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 64 2e-11
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 35 0.016
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 32 0.11
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.60
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.4
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 7.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 7.4
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 7.4
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 9.7
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 9.7
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 113 bits (273), Expect = 2e-26
Identities = 58/161 (36%), Positives = 92/161 (57%), Gaps = 2/161 (1%)
Frame = +2
Query: 338 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL--NGTLSDWSYFAV 511
MG L++P T+K++ +G + YG++SMQGWR+ MEDAH A L++ + +FAV
Sbjct: 1 MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60
Query: 512 FDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKS 691
+DGH G +V+ C NL + + + +F++ D A+++ FL+ DK + + + + S
Sbjct: 61 YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHT--DPS 118
Query: 692 GSTAVCAFVSPEQIYIANCGDSRAVLARGGIPIFATRXHKP 814
G TA ++Y AN GDSR VL GI + HKP
Sbjct: 119 GCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKP 159
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 113 bits (272), Expect = 3e-26
Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Frame = +2
Query: 338 MGAFLNKPETKKYNESGEGNGLRYGVASMQGWRVEMEDAHHAQLTL---NGTLSDWSYFA 508
MG L++P K++ SG L +GV+ MQGWR+ MEDAH A L N + S+F
Sbjct: 1 MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60
Query: 509 VFDGHAGARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEK 688
VFDGH G RV+ +C ++L + I F + + EA+++GFL D + + ++ ++
Sbjct: 61 VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAADNALMQDRDMQ--EDP 118
Query: 689 SGSTAVCAFVSPEQ-IYIANCGDSRAVLARGGIPIFATRXHKP 814
SG TA A + Q IY AN GDSR VL R G + HKP
Sbjct: 119 SGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKP 161
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 64.1 bits (149), Expect = 2e-11
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Frame = +2
Query: 425 QGWRVEMEDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECILQTEEFRRED 604
Q WR MED H G D + AV+DGHAG + S +C +NL + +L E+ R E
Sbjct: 80 QRWRRSMEDTHICLYDFGGNQDD-GFVAVYDGHAGIQASDYCQKNLHKVLL--EKVRNEP 136
Query: 605 ---IAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAVCAFVSPEQ------IYIANCGDS 757
+ + + F++++ K+++ + + G TA AF E+ +Y AN GD+
Sbjct: 137 DRLVTDLMDETFVEVNSKIAK----ATHNDICGCTAAVAFFRYEKNRTRRVLYTANAGDA 192
Query: 758 RAVLARGGIPIFATRXHK 811
R VL R G I + HK
Sbjct: 193 RIVLCRDGKAIRLSYDHK 210
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 34.7 bits (76), Expect = 0.016
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Frame = +2
Query: 383 SGEGNGLRYGVASMQGWRVEMEDAHHAQLTLNGTLSDWS-YFAVFDGHAGA----RVSAH 547
S + N LRYGV + + A +L +N L S + V D A RV
Sbjct: 988 SPQPNILRYGVCGYLSRSIPVISA--CELVVNNFLHPQSSLYCVLDSDISAGKNNRVLKF 1045
Query: 548 CAENLLECI---LQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSG 694
+NL C+ + + E I A+R GFL L+KK+ + K G
Sbjct: 1046 VYDNLASCLAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEG 1097
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 446 EDAHHAQLTLNGTLSDWSYFAVFDGHAGARVSAHCAENLLECIL-QTEEFRREDIAEAIR 622
ED H + N +W ++ +FDGH+G S ++L+ ++ + ++ +
Sbjct: 98 EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTASYYHQNAC 157
Query: 623 TGFLDLDKKMSE 658
L LDK +SE
Sbjct: 158 PSSLALDKSISE 169
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 29.5 bits (63), Expect = 0.60
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 527 GARVSAHCAENLLECILQTEEFRREDIAEAIRTGFLDLDKKMSELPELSNGKEKSGSTAV 706
GA CA N LEC ++ + D + + F+DL K+ L + E+ ST V
Sbjct: 52 GANPCKACASNNLECTYPVKDEKEMDYS---KDYFIDLSKRYKCLEYI---VERLCSTKV 105
Query: 707 CAFVSPEQIYIAN 745
+ +P I + N
Sbjct: 106 STYTTPSLIEVCN 118
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 359 PETKKYNESGEGNGLRYGVASMQGWRVEMEDAH-HAQL--TLNGTLSDWSYFAVFD 517
PE + YN +GE YG AS + + H +Q ++ ++ DW Y +F+
Sbjct: 230 PEIQDYNFAGENGMGVYGAASAYTYSDAYQALHTRSQYLREMSNSIEDWDYELMFE 285
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 629 FLDLDKKMSELPELSNGKEKSGSTAVCAFVSP--EQI 733
FLDL +P LSN ST +C F SP EQI
Sbjct: 184 FLDLPAPWEAIPHLSNHVNHDKSTRICCF-SPCIEQI 219
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -2
Query: 638 NPGNQYGL---LQLCLHAETPPSAEYIQEDFLHSVRR 537
N G++ G+ L+ +++ TP E +DF+++VRR
Sbjct: 1957 NSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRR 1993
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 458 HAQLTLNGTLSDWSYFAVFD 517
H +T NG L+ WS +FD
Sbjct: 357 HGYVTYNGWLAQWSMITLFD 376
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 662 PELSNGKEKSGSTAVCAFVSPEQIYIAN 745
PEL+ K G T VC E+IY A+
Sbjct: 333 PELTTSKRDFGVTNVCTSPDGERIYAAS 360
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 587 EFRREDIAEAIRTGFLDLDKKMSELPELS 673
+F + D+A+ + T F+ +D +++LP +S
Sbjct: 55 QFAQRDLAKDLVTKFMQIDTLINQLPGIS 83
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 545 HCAENLLECILQTEEFRREDIAEAIRTGFLDLDKK 649
H E L++CIL+ EE+ + I FLD+ K+
Sbjct: 74 HSEEKLVDCILKDEEYDKR--YPGIHIVFLDMVKE 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,358
Number of Sequences: 5004
Number of extensions: 59247
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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