Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L24
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867...    31   1.1  
03_05_0847 + 28186873-28188147                                         29   3.3  
02_03_0367 + 18220099-18220905                                         28   7.5  
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606...    27   9.9  

>05_05_0210 -
           23285241-23285338,23286297-23286447,23286660-23286748,
           23287108-23288394,23288460-23288516,23289446-23289644,
           23290240-23290342,23291048-23291229,23291850-23291899,
           23292192-23292360
          Length = 794

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 594 IXSGGRHLSIGSGNHLTSGGP*DRPP 517
           +  GG H  +G G  L SGGP   PP
Sbjct: 72  LLEGGGHYHVGLGRRLLSGGPGSHPP 97


>03_05_0847 + 28186873-28188147
          Length = 424

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 568 RQMPPPTXDMSSKVSVCLQRLPR 636
           R  PPP   MSS+ + CLQ  PR
Sbjct: 156 RSFPPPLPSMSSRDAPCLQMRPR 178


>02_03_0367 + 18220099-18220905
          Length = 268

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 568 RQMPPPTXDMSSKVSVCLQRLPRPTE 645
           R+ PPP   MS KV+   Q+ P+P E
Sbjct: 151 RRPPPPPSPMSPKVTPAQQQPPQPAE 176


>02_02_0009 +
           6068260-6068591,6068797-6068917,6069034-6069122,
           6069207-6069291,6069421-6069580,6069667-6069743,
           6069848-6069898,6069979-6070069,6070167-6070468,
           6070549-6070830,6070911-6071388,6071457-6071560,
           6071647-6071809,6071895-6072017,6072099-6072217,
           6072304-6072636,6072713-6073003,6073088-6073171,
           6073260-6073393,6073478-6073705,6073795-6073966,
           6074062-6074316,6074408-6074668
          Length = 1444

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 414 INKNQYWLGLYNLSPIIVMS*RY*ATVFFILLLQWVDDL 530
           ++ N YW+G+  L   I++       + FIL L+W+D L
Sbjct: 747 VDANWYWIGVGALLGYIMLF-----NILFILFLEWLDPL 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,177
Number of Sequences: 37544
Number of extensions: 344252
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)