Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L24
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.        28   6.7  
AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and gl...    28   6.7  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    27   8.9  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    27   8.9  

>X77495-1|CAA54629.1|  402|Caenorhabditis elegans lag-2 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 328 NGFQLSPPRPSQCSVK 281
           N FQL+ PRP  CSVK
Sbjct: 221 NQFQLTAPRPDACSVK 236


>AC024205-1|AAF36047.1|  402|Caenorhabditis elegans Lin-12 and glp-1
           phenotype protein2 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 328 NGFQLSPPRPSQCSVK 281
           N FQL+ PRP  CSVK
Sbjct: 221 NQFQLTAPRPDACSVK 236


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -2

Query: 307  PRPSQCSVKW-VHKCLLFGNLLVLQALPVASCGNIINQRVSVKSN 176
            P  S C   W  HKC    + +    LPV S  N+ +    V SN
Sbjct: 1745 PAESTCHRAWNKHKCKCHKSFVGDTCLPVCSVANVCSSGTCVSSN 1789


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 132 STSMYFHLC*ILLFSF 179
           +T MYFHLC  L+F F
Sbjct: 213 TTGMYFHLCYYLIFKF 228


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 132 STSMYFHLC*ILLFSF 179
           +T MYFHLC  L+F F
Sbjct: 336 TTGMYFHLCYYLIFKF 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,049
Number of Sequences: 27780
Number of extensions: 283008
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)