Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L21
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.49 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.86 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   1.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 522 WGNLASRQRRHSKHFHSSLNHWYHLQK 602
           WG+   +  RH +HF SS  +  H +K
Sbjct: 83  WGD-GDKHDRHERHFESSFGNNLHSEK 108


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 575 AAMKVFAVSSLSRSQVTPRAMHE*NDAIIPSVQPVVVPCFIT 450
           A +K+     L+R +   + +H  N  I   V+P  V C+IT
Sbjct: 488 APVKISVQEVLNRVRKPTKKLHLKNSPISKKVRPPQVLCYIT 529


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 495 CIVLLMHSPWGNLASRQRRHSKHFHSSLNHWYHLQKHIWSSFNGSWCSY 641
           C +LLM S   N++S + ++ +    +  + + +Q++ W   N     Y
Sbjct: 8   CCLLLMFSYTDNVSSTRTKYLRTNFPNFYNDFEVQRYTWKCENQKCVKY 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 175 NEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGS 354
           N   +N +S N     N+ P Y  +MQP++L     +  +T         + G   MTG 
Sbjct: 289 NGHGHNTSSHNYYAQ-NYAPTYYGQMQPDYL-----NSQTTQNHMQAMNNMAGTYQMTGY 342

Query: 355 GLGGMA 372
              GMA
Sbjct: 343 SAMGMA 348


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 194 WLFFCSFLLSISPNIDIFV 138
           WLF C FL  I   +++ +
Sbjct: 667 WLFHCHFLFHIVIGMNLII 685


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,809
Number of Sequences: 336
Number of extensions: 3317
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)