Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L21
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0102 - 826827-827411 63 3e-10
10_08_0647 - 19576672-19577259 58 6e-09
04_04_0826 - 28453018-28453284,28453286-28453594 44 1e-04
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 33 0.25
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 33 0.32
04_01_0477 - 6221990-6223224,6227722-6228817 30 1.7
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 1.7
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 9.2
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 9.2
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 28 9.2
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 28 9.2
>03_01_0102 - 826827-827411
Length = 194
Score = 62.9 bits (146), Expect = 3e-10
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +1
Query: 256 PEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRT 435
PEFL+ ++S + N+ G+ +++G+ G GL R G K+R
Sbjct: 46 PEFLFQEESLAQRRSWGENLTY-YTGIGYLSGAVAGAAVGLRDAARNAE-PGDTAKIRAN 103
Query: 436 QVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGL 615
+V+N G G TLG+I Y+ I G+ +RD++D N+ A TG ++++ +G
Sbjct: 104 RVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGP 163
Query: 616 RS 621
RS
Sbjct: 164 RS 165
>10_08_0647 - 19576672-19577259
Length = 195
Score = 58.4 bits (135), Expect = 6e-09
Identities = 40/155 (25%), Positives = 70/155 (45%)
Frame = +1
Query: 157 GDILNKNEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGM 336
GD +K N +PY ++ Y PEFL+ ++S + N+ G+
Sbjct: 15 GDASGPGRRKYNPYHDLSTPY-SYQTLYDLPTSPEFLFQEESAAQRRSWGENLTY-YTGV 72
Query: 337 SFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCI 516
+++G+ G GL + A G K+R +V+N G G LG+I Y+ +
Sbjct: 73 GYLSGAVAGAALGL-RDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGM 131
Query: 517 ALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRS 621
+ RD++D N+ A TG ++++ +G RS
Sbjct: 132 ESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRS 166
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 44.4 bits (100), Expect = 1e-04
Identities = 34/134 (25%), Positives = 57/134 (42%)
Frame = +1
Query: 220 LNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRAT 399
++F Y PEFL+ +++ + ++ G ++ G G AGL +
Sbjct: 29 ISFRELYDLPTSPEFLFHEEALRSRRTCGEDLTF-YTGCGYLVGRAAGAAAGLKRAAEEA 87
Query: 400 TLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAAS 579
G+ K+R G G LG++A + I V LRD + ANT A
Sbjct: 88 E-RGESMKLRGQPRPQPCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGI 146
Query: 580 TTGIIYKSTSGLRS 621
TG +Y++ +G R+
Sbjct: 147 GTGALYRAAAGPRA 160
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -3
Query: 642 GSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCAACSRT 463
G+C H ++CA N TSG Y C ++ P P G V C N+ T
Sbjct: 332 GACHSNH---SKCA--NVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNSICGAGST 386
Query: 462 LLHNIINYLCPSHF 421
+ +Y C +F
Sbjct: 387 CKNTEGSYRCDCNF 400
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 32.7 bits (71), Expect = 0.32
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 3/160 (1%)
Frame = +1
Query: 154 FGDILNKNEQ-KNNQASANLSPYL-NFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPI 327
FG + K E+ K S S L +FD P E+ M + L
Sbjct: 184 FGSLFGKKEEEKKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSMERDPCPDRI-LDD 242
Query: 328 IGMSFMTGSGLGGMAGLYKGLRATTLAGQ-VGKVRRTQVVNYVMKQGTTTGCTLGIIASF 504
IG SF G+ G KGLR + + G + ++ + G C L F
Sbjct: 243 IGASFGMGAVGGSFFHFVKGLRNSPSGARFAGGMEGVRMNAPRVAGGFAVWCGL-----F 297
Query: 505 YSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSM 624
+C V+ +R KED N+ IA + TG I + GLR++
Sbjct: 298 SACDCALVS-VRQKEDPYNSIIAGAATGGILAARQGLRAV 336
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 531 LASRQRR-HSKHFHSSLNHWYHLQKHIWSSFNGSWCSYR 644
LA RR H SL HWYH KH+ F+ + S+R
Sbjct: 212 LAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFR 250
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 202 ANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLY 381
AN S Y + +PR F +PD S + RS V +P I +F G GG +
Sbjct: 174 ANGSRYDGVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVR 233
Query: 382 K 384
K
Sbjct: 234 K 234
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 316 ALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYV 453
AL ++G+ G L G + LRA + KVR ++V +V
Sbjct: 325 ALVLVGIVHKAGEALEGYIQTHSQLRANIMGKMSKKVRHDEIVEHV 370
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 346 TGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVN 447
TG+G G M GL KG+ A + Q+ + R Q+ N
Sbjct: 785 TGAGKGPMEGLLKGMEAWNVV-QLASILRQQLEN 817
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 392 LSPLYNPAIPPKPEPVIKDIP 330
LSPL +P+ PP+P+P + +P
Sbjct: 87 LSPLPSPSPPPQPQPQAQPLP 107
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 265 LYPDDSH-MASTARRSNVALPIIGMSFMTGSGLGGMAGLYKG 387
L+P S +AS+ + ALP++ + TG+ GG+ G Y G
Sbjct: 272 LFPVKSERLASSTSSDSDALPLLVEAAATGARNGGIGGSYSG 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,701,055
Number of Sequences: 37544
Number of extensions: 320685
Number of successful extensions: 1026
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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