Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L15
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch... 43 1e-05
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo... 25 3.2
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 24 5.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 24 7.3
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 23 9.6
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch... 23 9.6
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met... 23 9.6
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 23 9.6
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 23 9.6
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 23 9.6
>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 43.2 bits (97), Expect = 1e-05
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 91 LKKTGCLELHYKVQECIAETKXWRKCQTAVNNFRDCINK 207
L+K GC+E H ++ +C +T WRKC + FR C K
Sbjct: 22 LEKGGCVEEHLRLNDCYWDTHDWRKCTEQMEEFRKCWEK 60
>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 25.0 bits (52), Expect = 3.2
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 110 WNYTIKCRNASPKRKXGE--SVKPQLIISEIVSTNINRKKQLK 232
WN+ I C N K++ G+ + + I I+ N N + K
Sbjct: 25 WNHDITCLNFKVKKRRGDFYVINERFFIKYIIKKNKNPQNLTK 67
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 101 LAVW---NYTIKCRNASPKRKXGESVKPQLIISEIVS 202
+ VW NY +C N + K ES++P+ I V+
Sbjct: 252 VTVWSAPNYCYRCGNVASVMKVDESLEPEFRIFSAVA 288
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 53 HSSAVXLLPWKAC*KKLAVWNYTIK 127
+S A+ + WK K + WNY K
Sbjct: 169 NSDAIKSIAWKEKDKSIKTWNYQPK 193
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 161 ESVKPQLIISEIVSTNINRKKQLKINIKS 247
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43
>SPCC1827.06c |||aspartate semialdehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 357
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 91 ACLPREQXHCRAVIEVLEADF 29
AC P+E C V L+ADF
Sbjct: 68 ACDPKEFSECDIVFSGLDADF 88
>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
Met11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +1
Query: 10 LKRLSSKNLPLKPRSQLGSXAAPVEGMLKKTGCLELHYKVQECI 141
+ R+S +PL G+ + E + LE H+K+ C+
Sbjct: 37 ITRMSRNMMPLFSSVTWGTAGSTAEVSIYLAKMLEQHHKIPACL 80
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 161 ESVKPQLIISEIVSTNINRKKQLKINIKS 247
E KP+ + + + TNI + ++ KINIK+
Sbjct: 35 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 63
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 161 ESVKPQLIISEIVSTNINRKKQLKINIKS 247
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIVKPQKDKINIKT 43
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 161 ESVKPQLIISEIVSTNINRKKQLKINIKS 247
E KP+ + + + TNI + ++ KINIK+
Sbjct: 15 ELCKPEKVNKQNLFTNIIKPQKDKINIKT 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,210
Number of Sequences: 5004
Number of extensions: 14978
Number of successful extensions: 53
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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