Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L15
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 32 0.13
02_05_0390 + 28557722-28557937,28558440-28558514,28558597-285587... 29 1.2
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632... 28 1.6
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265... 28 2.1
05_01_0271 + 2105122-2105470,2105557-2105954,2106035-2106273,210... 27 5.0
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16... 27 5.0
01_02_0042 - 10513799-10514152,10514252-10514545,10514630-105148... 27 5.0
04_03_0272 + 13725262-13725443,13726036-13726114,13726329-137263... 26 6.6
02_05_0389 + 28551649-28551903,28552328-28552402,28552482-285526... 26 8.7
01_06_0584 - 30407012-30408531,30408625-30408955 26 8.7
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 94 KKTGCLELHYKVQECIAETKX-WRKCQTAVNNFRDCINKHKQ 216
K C + + V +C+ TK ++KC+T ++ + +C N K+
Sbjct: 69 KDDPCCDTYSLVMKCLENTKNDFKKCKTLIDKYEECSNPPKE 110
>02_05_0390 +
28557722-28557937,28558440-28558514,28558597-28558766,
28559046-28559124,28559320-28559516,28560300-28560387,
28560453-28560679,28560763-28560919,28561467-28561517
Length = 419
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 13 KRLSSKNLPLKPRSQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRKCQTAVNNFR 192
K+ ++ L R +L S P E +LK+ LE +QE + +K C+ A++
Sbjct: 265 KKKDENDIYLMERQKLHSM--PAEQLLKERRELEELMNIQEALRSSKQCPHCKMAISKIE 322
Query: 193 DC 198
C
Sbjct: 323 GC 324
>04_03_0278 -
13761999-13762462,13762628-13762727,13763065-13763289,
13763347-13763415,13763605-13764432,13764706-13764779,
13818821-13818905
Length = 614
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 145 RRCIPALYSVVPDSQFFSA 89
+RCIP LYS+VP F A
Sbjct: 436 KRCIPRLYSIVPMEHAFKA 454
>02_03_0056 -
14525491-14525833,14525882-14526125,14526447-14526591,
14526757-14527121,14527323-14527722
Length = 498
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 49 RSQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRKCQTAVNNFRDCINKHKQE 219
R LG ++ + +TG E+HY + E IA+T+ W+ Q A F + N +Q+
Sbjct: 427 RWDLGEITRRMDTLDMQTG--EIHYNLTEHIAQTQEWQ--QPANAQFANINNMMQQQ 479
>05_01_0271 +
2105122-2105470,2105557-2105954,2106035-2106273,
2107120-2107645,2107817-2108090,2108197-2109056,
2109201-2109467,2109711-2109974,2110063-2110356,
2110455-2110814
Length = 1276
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 4 LPLKRLSSKNLPLKPRSQLGSXAAPVEGML 93
+PL RL++ N P P LGS A+ V G++
Sbjct: 692 VPLSRLAALNKPEIPVLLLGSVASAVSGVI 721
>05_01_0024 -
164618-165139,166884-166949,167046-167216,167321-167422,
167538-167600,167679-167825,168234-168359,168742-168921,
169183-169322,169688-169861,170096-170123
Length = 572
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 100 TGCLELHYKVQEC-IAETKXWRKCQTAVNNFRDCINKHKQEETTK 231
T C E ++C ++ + KC AV F C+ +Q TK
Sbjct: 525 TPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLARQRGNTK 569
>01_02_0042 -
10513799-10514152,10514252-10514545,10514630-10514893,
10515019-10515285,10515363-10516207,10516311-10516584,
10516694-10517219,10518009-10518247,10518370-10518591,
10518689-10518864,10518962-10519358
Length = 1285
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 4 LPLKRLSSKNLPLKPRSQLGSXAAPVEGML 93
+PL RL+S N P P LGS A+ + G++
Sbjct: 703 VPLSRLASLNKPEIPVLILGSIASVISGVI 732
>04_03_0272 +
13725262-13725443,13726036-13726114,13726329-13726390,
13726575-13726700,13726780-13726879,13727143-13727226,
13727328-13727462
Length = 255
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 73 QXHCRAVIEVLEADFWRKDVXVAR 2
+ HCR + + EA FW+++V R
Sbjct: 74 EEHCRLLNPMSEAKFWQREVTTLR 97
>02_05_0389 +
28551649-28551903,28552328-28552402,28552482-28552605,
28552692-28552978,28553147-28553482,28553813-28553869,
28554156-28554382,28554465-28554627,28554912-28554938
Length = 516
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 76 PVEGMLKKTGCLELHYKVQECIAETKXWRKCQTAVNNFRDC 198
P E +LK+ ++ +QE + ++K +C+ A++ C
Sbjct: 387 PEEQLLKEKREIDELINIQEALRDSKQCPRCKMAISKIEGC 427
>01_06_0584 - 30407012-30408531,30408625-30408955
Length = 616
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 142 RCIPALYSVVPDSQFFSACLPREQXHCRAVIEVL 41
RC+P L VV + S R Q HCR V ++L
Sbjct: 418 RCLPVLSFVVYSPRDGSEQDERPQLHCRFVTKLL 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,720,567
Number of Sequences: 37544
Number of extensions: 95612
Number of successful extensions: 250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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