Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L15
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical ...    27   2.6  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    27   3.4  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    27   3.4  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical
           protein F43D9.3b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +1

Query: 52  SQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRKCQTAVNNFRDCINKHK 213
           ++LGS    +  +L+    ++LH  +   + +    RK   ++++ + C N H+
Sbjct: 396 AKLGSTVMSLPDLLESKRLIDLHTNIATTLLDVIKERKLDVSLSSSKSCCNTHR 449


>Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical
           protein F43D9.3a protein.
          Length = 707

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +1

Query: 52  SQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRKCQTAVNNFRDCINKHK 213
           ++LGS    +  +L+    ++LH  +   + +    RK   ++++ + C N H+
Sbjct: 396 AKLGSTVMSLPDLLESKRLIDLHTNIATTLLDVIKERKLDVSLSSSKSCCNTHR 449


>AC006633-6|AAK68378.4|  578|Caenorhabditis elegans Hypothetical
           protein F35B3.7 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 19  LSSKNLPLKPRSQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRK 165
           +SSK    KP ++  S A P +   +K   ++      EC+AETK  RK
Sbjct: 56  VSSKTQLTKPNNEPKSKATPDKATTQKL-FMKRDKNATECLAETKIERK 103


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121  YKVQECIAETKXWRK-CQTAVNNFRDCI 201
            Y+ Q+ IAE K   K CQ A +N+RD I
Sbjct: 1069 YEKQKKIAEAKLSTKECQNAESNYRDAI 1096


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121  YKVQECIAETKXWRK-CQTAVNNFRDCI 201
            Y+ Q+ IAE K   K CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 121  YKVQECIAETKXWRK-CQTAVNNFRDCI 201
            Y+ Q+ IAE K   K CQ A +N+RD I
Sbjct: 1055 YEKQKKIAEAKLSTKECQNAESNYRDAI 1082


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 52  SQLGSXAAPVEGMLKKTGCLELHYKVQECIAETKXWRKC---QTAVNNFRDCINKHKQEE 222
           S+  + +   E +  K   +E  +K      +TK   +C   +T +NN +  + +  +EE
Sbjct: 61  SESSTDSNAAENLDNKENIIESTFKTAIDKEDTKSCSECTEFKTYMNNMKSVLEETLEEE 120

Query: 223 TTKNK 237
             KNK
Sbjct: 121 KEKNK 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,697,613
Number of Sequences: 27780
Number of extensions: 87838
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)