Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L13
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.66 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    22   6.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   6.1  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   6.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   8.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.1  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 615 PSVMPTPRSWAPTTSTSRAYCVLDSPRPPS 526
           P ++P P+  A T S++  Y    SP P S
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPES 226


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 358 WFRKRKHLCRFKSATEKIQSERGT 287
           W  KR+   RF+ AT +    RGT
Sbjct: 218 WSAKRQRDIRFQIATGRYDETRGT 241


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 522 PGTCSPNAPRSHSPATVPS 466
           PG  SP++PR  SP++  S
Sbjct: 62  PGRKSPSSPRISSPSSTKS 80



 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 537 RPPSSPGTCSPNAPRSHSP 481
           + PSSP   SP++ +S SP
Sbjct: 65  KSPSSPRISSPSSTKSGSP 83


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 583 PDHLDEPRVLRVGQPQAAELPRHLQPERAEIP 488
           P  +  P ++R G+P  +  P+H  P   ++P
Sbjct: 116 PRRVAVPVLVRDGKPCLSGGPKHPDPGSLQVP 147


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 113 TDYFFCY*KFFVINTMKGAKLVLCGGRCLVPKTTAVVPL 229
           T Y   + +F +  T KGA   +   R  +P     VP+
Sbjct: 365 TVYLIMFIQFDIATTTKGAAPAVSKARQFLPALPGYVPV 403


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 113 TDYFFCY*KFFVINTMKGAKLVLCGGRCLVPKTTAVVPL 229
           T Y   + +F +  T KGA   +   R  +P     VP+
Sbjct: 190 TVYLIMFIQFDIATTTKGAAPAVSKARQFLPALPGYVPV 228


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 606 MPTPRSWAPTTSTSRAYCVLDSPRPPSSPGTCSPNAP 496
           +P+P S   +T + R Y  ++  +  S+P   SP  P
Sbjct: 409 LPSPGSDQRSTPSPRVYGNVNENQDCSTPTENSPTKP 445


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 360 FPMTNVKCYKSSCRQSRNS--FKK*MTPLRMMRIQRLRRVPSP 482
           +P   +  Y  S   ++N+  F     P+R + +   R +PSP
Sbjct: 38  YPQNYINSYLFSLSLAQNNQLFTHHKAPIRPVALPPKREIPSP 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,377
Number of Sequences: 336
Number of extensions: 3616
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)