Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L10
         (645 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E485 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A6Q3G5 Cluster: Two-component sensor histidine kinase; ...    33   5.9  

>UniRef50_A2E485 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1711

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -3

Query: 259 HSLPQSMGYLTLKEFFKSDQ*FLRFARSNKLFSFIILVYKIVCLCLIIISF 107
           H  P ++  LT +E+FKSDQ F+    SN  F+   +++ + C CL ++ +
Sbjct: 100 HKEPNALSQLT-REYFKSDQKFISCLESND-FNLAHIIFNL-CYCLELVKY 147


>UniRef50_A6Q3G5 Cluster: Two-component sensor histidine kinase;
           n=1; Nitratiruptor sp. SB155-2|Rep: Two-component sensor
           histidine kinase - Nitratiruptor sp. (strain SB155-2)
          Length = 276

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 215 KFFQC*IAH*LRKAMVYITLRLDKNTDED 301
           K F   +AH ++K M+Y+ ++L+K TDED
Sbjct: 76  KQFNINLAHEIKKPMIYLAMKLEKLTDED 104


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 592,054,172
Number of Sequences: 1657284
Number of extensions: 11410149
Number of successful extensions: 22939
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22931
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)