Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L10
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    27   1.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   9.3  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 510 LAREIRERLSTV*HLVTAIQELLNLRAATSVDNKLNRKNLTLRTFFP 370
           +   IR+++ T+ +L+  +QE+    A    DN  +R +  + T FP
Sbjct: 305 IENSIRKKIQTIKNLIPVLQEMDKEHARIDFDNVDSRLDPNILTTFP 351


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 117 LFHSVFKSIIYKLKQIFFCLI*NDGTLKPTVTNPRFKE 4
           +FH  F S   K+K+I  C+  N G LK   +NP+F +
Sbjct: 92  VFHIGFLS---KIKKILECVCWNCGKLKIDSSNPKFND 126


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 138 ILYTNIIKLKSLFERANLRNYWSDLKNS 221
           +L +NIIKL+SL+  A  R  +   KNS
Sbjct: 816 LLSSNIIKLQSLWRTALKRKEFIQTKNS 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,175
Number of Sequences: 5004
Number of extensions: 50801
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)