Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L10
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0015 - 111666-111747,112043-112368,112500-112635,112772-11...    30   1.4  
11_01_0015 - 115965-116076,116432-116757,116889-117024,117161-11...    30   1.4  

>12_01_0015 -
           111666-111747,112043-112368,112500-112635,112772-112955,
           113067-113135,113703-113829,115810-116051,116125-116279,
           116751-116822,116908-116976,117058-117129,117217-117349,
           117439-117944,118033-118567,118753-118819
          Length = 924

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 256 SLPQSMGYL-TLKEFFKSDQ*FLRFARSNKLFSFIILVYKIVCLCLIIIS 110
           +LP S+G L  LKEFF  +   LR   SN   + +I+V  +V   LI+++
Sbjct: 471 ALPPSLGELPNLKEFFSGNS-DLRMGHSNTGRTIVIIVCAVVGAILILVA 519


>11_01_0015 -
           115965-116076,116432-116757,116889-117024,117161-117344,
           117455-117523,118091-118217,120028-120269,120343-120497,
           120969-121040,121126-121194,121276-121347,121435-121567,
           121661-122166,122255-122789,122943-123018
          Length = 937

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 256 SLPQSMGYL-TLKEFFKSDQ*FLRFARSNKLFSFIILVYKIVCLCLIIIS 110
           +LP S+G L  LKEFF  +   LR   SN   + +I+V  +V   LI+++
Sbjct: 474 ALPPSLGELPNLKEFFSGNS-DLRMGHSNTGRTIVIIVCAVVGAILILVA 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,301,928
Number of Sequences: 37544
Number of extensions: 289991
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)