Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L08
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23) 181 5e-46
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41) 30 1.3
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 30 1.7
SB_15798| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-33) 30 1.7
SB_10243| Best HMM Match : Ank (HMM E-Value=0) 30 1.7
SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7) 29 3.9
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 28 5.1
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 8.9
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 27 8.9
SB_505| Best HMM Match : F5_F8_type_C (HMM E-Value=4.80645e-43) 27 8.9
>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
Length = 145
Score = 181 bits (440), Expect = 5e-46
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = +1
Query: 43 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVA 222
RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++A
Sbjct: 23 RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLA 82
Query: 223 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 360
TVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N V V +
Sbjct: 83 TVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128
>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
Length = 316
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/98 (20%), Positives = 36/98 (36%)
Frame = -2
Query: 300 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVV 121
S+ +PD+ + R+ + N PG R S + + +D + + ++C
Sbjct: 82 SDSHVIPDNRFSATTIYDSRYHPYYARLNGSPGWCRSGSSTSEYLQIDLNAVFVVCAVAT 141
Query: 120 GAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKFFIG 7
Y + W T +F S+ R K F G
Sbjct: 142 QGASYGTEWVTSYKVQFSMDNQAWSTYRETGTDKVFTG 179
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 91 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 183
L +GA ++CADN G L +A QG +N
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 943
>SB_15798| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-33)
Length = 156
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/93 (21%), Positives = 34/93 (36%)
Frame = -2
Query: 285 LPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDY 106
LPD+ + R+ + N PG R+ S + +D + + ++C Y
Sbjct: 19 LPDNRFSASTIYDSRYHPYYARLNGSPGWCRKSSDPKGYLQIDLNAVFVVCAVATQGASY 78
Query: 105 CSHWETQGDTEFRSRGTTTSSLRHFVVSKFFIG 7
+ W T +F S+ R K F G
Sbjct: 79 GTEWVTSYKVQFSMDNQAWSTYRETGTDKVFNG 111
>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
Length = 475
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 91 LPVGAVINCADNTGAKNLYVIAVQGIKGRLN 183
L +GA ++CADN G L +A QG +N
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQGCYNLVN 139
>SB_25243| Best HMM Match : Protamine_P1 (HMM E-Value=5.7)
Length = 201
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 416 CGRVLPQTRALSLEYTFKISSC 481
CGR +P RA+ +Y K S C
Sbjct: 139 CGRAIPTLRAMRAQYELKASEC 160
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 375 ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 244
A FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 188 SLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRP 45
SLF++ T T AP L + APT P ++ AP PP P
Sbjct: 67 SLFKKKKQAPTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPP 114
>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 366 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 244
FA+ Y R L Y+Y TPS+ F D CR L FP F
Sbjct: 2 FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42
>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 174 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 76
T + + +I CP VVG V+ CS W T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +3
Query: 84 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 221
P S SS+ R +H+GK S RSP T G HD G
Sbjct: 107 PNPASLSSHSRRERHQGKGSPMSSPAMRPRSPMVTPGSH-SNHDAG 151
>SB_27203| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 527
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/98 (19%), Positives = 36/98 (36%)
Frame = -2
Query: 300 SERFPLPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVV 121
S+ +PD+ + R+ + N PG R S + + +D + + ++C
Sbjct: 41 SDSHVIPDNRFSATTIYDSRYHPYYARLNGSPGWCRSGSSTSEYLQIDLNAVFVVCGVAT 100
Query: 120 GAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSKFFIG 7
Y + W T +F S+ + K F G
Sbjct: 101 QGASYGTEWVTSYKVQFSMDNQAWSTYQETGTDKVFNG 138
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 398 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 258
AT V A + L T+ PAL++K+IN +R N + L+ +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232
>SB_505| Best HMM Match : F5_F8_type_C (HMM E-Value=4.80645e-43)
Length = 235
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Frame = -2
Query: 285 LPDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDTLDSDHIQILCPCVVGAVDY 106
+PD+ + R+ + N PG R+ S + + +D + + ++C Y
Sbjct: 1 MPDNRFSATTIYDSRYHPYYARLNGSPGWCRKSSDTSGYLQIDLNAVFVVCAVATQGASY 60
Query: 105 CSHWETQGDTEFRSRGTTTSSLRHFV-VSKFFIG 7
+ W T +F S+ R K F G
Sbjct: 61 GTEWVTSYKVQFSMDNQAWSTYRETAGTDKVFTG 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,208
Number of Sequences: 59808
Number of extensions: 420777
Number of successful extensions: 1114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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