Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L08
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 244 5e-65
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 29 3.4
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 4.5
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.9
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 5.9
DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian str... 28 5.9
AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical ... 28 5.9
AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical ... 28 5.9
AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical ... 28 5.9
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 7.9
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 244 bits (596), Expect = 5e-65
Identities = 113/131 (86%), Positives = 123/131 (93%)
Frame = +1
Query: 34 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 213
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDM 60
Query: 214 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 393
V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGP
Sbjct: 61 FVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGP 120
Query: 394 VAKECADLWPR 426
VAKECADLWPR
Sbjct: 121 VAKECADLWPR 131
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 31.1 bits (67), Expect = 0.64
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -3
Query: 239 LPFL-TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 63
+PF+ T + P A ++ R P+ P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 62 AEPPRPLLDILLYQNF 15
+P RP+ I Q F
Sbjct: 189 QQPFRPIQPIQPQQPF 204
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 483 TQLLILNVYSSDRARV*GNTRPQISTFFGYRPCDGRALHFALVI 352
T LL ++ S RAR+ P + F YRPC R L + ++
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 446 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 550
++LE F +++ PSTS S+P N N R R L
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 446 LSLEYTFKISSCVLLSFPSTSKSNPKNYNLRNRHL 550
++LE F +++ PSTS S+P N N R R L
Sbjct: 443 VNLENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 4.5
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +1
Query: 85 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 252
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 253 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 336
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 351 DYDTRIVLKVYKYSITPSERFPL 283
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 194 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 102
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>DQ812088-1|ABG89384.1| 530|Caenorhabditis elegans mammalian
stromal interaction molecule-1 protein.
Length = 530
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 432 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYNVNALSLNIRLRLEKKKK 605
+K +YR +RL + F + + N+T+ I++ + + + + L +R + + ++K
Sbjct: 162 IKSSVYRQKLRLNSLDVVLFGYKDNNNRTKDILLAFLALLLTSLIFLYVRQKQKAQQK 219
>AC024823-3|AAP40515.1| 395|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1c protein.
Length = 395
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 432 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYNVNALSLNIRLRLEKKKK 605
+K +YR +RL + F + + N+T+ I++ + + + + L +R + + ++K
Sbjct: 162 IKSSVYRQKLRLNSLDVVLFGYKDNNNRTKDILLAFLALLLTSLIFLYVRQKQKAQQK 219
>AC024823-2|AAF59596.3| 530|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1a protein.
Length = 530
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 432 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYNVNALSLNIRLRLEKKKK 605
+K +YR +RL + F + + N+T+ I++ + + + + L +R + + ++K
Sbjct: 162 IKSSVYRQKLRLNSLDVVLFGYKDNNNRTKDILLAFLALLLTSLIFLYVRQKQKAQQK 219
>AC024823-1|AAL32257.1| 510|Caenorhabditis elegans Hypothetical
protein Y55B1BM.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/58 (20%), Positives = 31/58 (53%)
Frame = +3
Query: 432 LKRELYRLNIRLRLVAAFYFPFLVHQNQTRKIIICVIDIYNVNALSLNIRLRLEKKKK 605
+K +YR +RL + F + + N+T+ I++ + + + + L +R + + ++K
Sbjct: 162 IKSSVYRQKLRLNSLDVVLFGYKDNNNRTKDILLAFLALLLTSLIFLYVRQKQKAQQK 219
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 84 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 179
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,623
Number of Sequences: 27780
Number of extensions: 302353
Number of successful extensions: 887
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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