Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L06
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 253   3e-71
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            86   2e-17
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            69   3e-12
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.53 
SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)             30   1.6  
SB_37203| Best HMM Match : HALZ (HMM E-Value=6.6)                      29   4.9  
SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)                28   6.5  
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)                28   8.6  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  253 bits (620), Expect(2) = 3e-71
 Identities = 119/164 (72%), Positives = 135/164 (82%)
 Frame = +3

Query: 57  MSARYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 236
           MS  YD AITVFSPDGHL QVEYAQ AV+KGSTA             E+K+VAKLQE RT
Sbjct: 1   MSGSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRT 60

Query: 237 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 416
           VRKIC LDDHV+MAFAGLTADARIL+N+A++ECQSHKLTVEDPVTLEYITR+IA LKQ+Y
Sbjct: 61  VRKICTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRY 120

Query: 417 TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATG 548
           TQSNGRRPFGIS LI GFD+DG+P L+QT+PSG Y+ WK   +G
Sbjct: 121 TQSNGRRPFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164



 Score = 33.5 bits (73), Expect(2) = 3e-71
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = +3

Query: 651 EVVQSGQKNLXIAVMRRGQPM 713
           +VVQSG KN+ +AVM++G+PM
Sbjct: 159 KVVQSGGKNIELAVMKKGEPM 179


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 44/127 (34%), Positives = 67/127 (52%)
 Frame = +3

Query: 66  RYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 245
           RYD + + FSPDG + QVEYA  AV    TA             EK  ++KL E    ++
Sbjct: 136 RYDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKR 195

Query: 246 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 425
           I  +D H+ MA AGL AD+R ++  A+ E  +++     P+ L+Y+   ++G    +T  
Sbjct: 196 IFHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLY 255

Query: 426 NGRRPFG 446
           +  RPFG
Sbjct: 256 SAMRPFG 262


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
 Frame = +3

Query: 294 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFD 473
           AD+R  + RA+ E  + K      + ++ + + IA + Q YTQ+   RP G   ++ G D
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 474 YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLE 653
            +  P L++T+P+G +  +KA + G        FLEK        T N  V+ AI  L  
Sbjct: 123 EEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSS 182

Query: 654 VVQSGQK--NLXIAVMRRGQP 710
           V+ +  K   L + V+    P
Sbjct: 183 VLSADFKPSELEVGVVSMDNP 203


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +3

Query: 477 DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLEV 656
           D  PH+FQT PS  Y++ KA A G  +++ R +LEK   A         +K  ++AL E 
Sbjct: 1   DMGPHIFQTCPSANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKALRET 60

Query: 657 VQSGQ----KNLXIAVMRRGQ 707
           + + Q    KN  I ++ + Q
Sbjct: 61  LPNEQELTTKNCSIGLVGKDQ 81


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 429 GRRPFGISCLIGGFDYDGSPHLFQTEPS 512
           G RPFG+S L+ G+D D  P+LFQ +PS
Sbjct: 2   GVRPFGVSLLVAGWD-DDRPYLFQCDPS 28


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 294 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG 446
           AD+R  + RA+ E  + K      + ++ + + +A + Q YTQ+   RP G
Sbjct: 26  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 60  SARYDXAITVFSPDGHLLQVEYAQXAVRK 146
           SA +D  IT+FSP+G L QV  ++  V++
Sbjct: 6   SAGFDRHITIFSPEGRLYQVADSRSQVQR 34


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 525 HNIYQKVQFGTSVVNHHSRILLSNTKYQMVDDHCSEYIS 409
           HN+ +  Q   +VV    R++ +NT+Y++ +DH  E I+
Sbjct: 602 HNVSEDKQGDVTVVTKTKRVVTNNTRYEIKNDHEPETIT 640


>SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
          Length = 616

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -3

Query: 314 Y*YTSVCCQSGKCHYDVIIQKTYFPHSSFFLQFSNRFFLNT*DYHIDSSNSN 159
           Y +T  C      H+   +Q +++P S FFL  + R  +    +HI+ S  N
Sbjct: 18  YKFTGFCAIEAPHHFYESLQPSFYPDSKFFLLSTLRLLIME-KFHINYSTKN 68


>SB_37203| Best HMM Match : HALZ (HMM E-Value=6.6)
          Length = 107

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 239 HSSFFLQFSNRFFLNT*DYHIDSSNSNCC*PLS 141
           H + +L   NR   N  D HIDS++SNC  P+S
Sbjct: 53  HHASWLDCGNRTE-NNGDLHIDSASSNCLQPVS 84


>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
          Length = 288

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 269 RNGICRIDSRRSYINKPCTNRMSITQVNSRGSSNIGVYYKIHS 397
           R  + R    R+Y+ +    R  ITQ  + G  N G++   HS
Sbjct: 245 RTHLSRTRVTRTYLTRTRVTRTRITQFGNSGDLNSGIWKSCHS 287


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +3

Query: 258 DDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR 434
           DDHV++  AG+T D  +      +E +   + + DP T++ I +  AG+      +NG+
Sbjct: 441 DDHVLVIAAGVTLDEAMKAAN-HLELEGIHVRILDPFTVKPIDK--AGIVANAKAANGK 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,583,171
Number of Sequences: 59808
Number of extensions: 411707
Number of successful extensions: 937
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)