Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L06
(715 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 281 4e-76
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 128 5e-30
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 124 6e-29
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 116 2e-26
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 108 4e-24
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 90 2e-18
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 81 8e-16
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.005
U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical pr... 29 2.5
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 29 2.5
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 29 2.5
Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H... 29 4.4
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 281 bits (689), Expect = 4e-76
Identities = 129/212 (60%), Positives = 167/212 (78%)
Frame = +3
Query: 66 RYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 245
RYD AIT+FSPDGHL QVEYAQ AV+KGSTA EKKS+ LQ++RT+RK
Sbjct: 3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRK 62
Query: 246 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 425
I ++DDHV++AFAGL+ADAR+L++RA+IECQS+KLT+EDPVT+ YI+RYIA KQ++TQS
Sbjct: 63 IHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQS 122
Query: 426 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEV 605
GRRPFGIS LIGGFD+DG+P LF+TEPSG YYE+ ANATGR K VRE+LE+ Y+ +
Sbjct: 123 PGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENT 182
Query: 606 ATENGAVKLAIRALLEVVQSGQKNLXIAVMRR 701
E +KL +++L +VV G +N+ IAVM++
Sbjct: 183 VDEATTLKLVVKSLAQVVPPGSQNIEIAVMKK 214
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 128 bits (308), Expect = 5e-30
Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 4/220 (1%)
Frame = +3
Query: 48 FLTMSARYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 227
FLT S YD + FSP+G L QVEYA AV+ GST+ EK+S +KL
Sbjct: 2 FLTRS-EYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMV 60
Query: 228 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 407
+ KI +D H+ + FAGL AD+R L+ RAQIE Q+ T + +E +T+ +A L
Sbjct: 61 NDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA 120
Query: 408 QKY----TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREF 575
++ +++ RPFG++ L G D +G+ LF +PSG + + KA + G ++ +
Sbjct: 121 LQFGDDDVKASMSRPFGVAMLFAGVDQEGA-KLFHLDPSGTFIDCKAKSIGAASDGAEQN 179
Query: 576 LEKNYTADEVATENGAVKLAIRALLEVVQSGQKNLXIAVM 695
L++ Y D + + G +K+A+ L +V++ + + V+
Sbjct: 180 LKEQY-HDALTIKEG-LKMALAILKQVMEEKLNSANVEVV 217
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 124 bits (299), Expect = 6e-29
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 3/218 (1%)
Frame = +3
Query: 57 MSARYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 236
M+ RYD T+FSP+G L QVEYA A+ T E+K+V KL ++
Sbjct: 1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSV 60
Query: 237 V-RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 413
+ K+ L D++ AG+TADA ILIN + S++ + + + +E + + + KQ+
Sbjct: 61 MTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQR 120
Query: 414 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYT 593
YTQ G+RPFG+S L G+D L+Q++PSG Y WKA G + + L++ Y
Sbjct: 121 YTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK 180
Query: 594 ADEVATENGAVKLAIRALLEV--VQSGQKNLXIAVMRR 701
+ + A +LAI+ L + V+ + + +AV+ R
Sbjct: 181 SPNL---EEAKQLAIKVLWKTLDVKLASEKVEMAVLTR 215
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 116 bits (278), Expect = 2e-26
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 4/216 (1%)
Frame = +3
Query: 57 MSARYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERT 236
M Y ++T FSP G L+Q+EYA AV+ G + E ++
Sbjct: 1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGSVLTDDQPK 60
Query: 237 VRKICLLDDHVVMAFAGLTADARILINRAQ-IECQSHKLTVEDPVTLEYITRYIAGLKQK 413
V +I H+ ++G+ D RIL+ +A+ I + + E+ T++ +T IA + Q+
Sbjct: 61 VEQI---SKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTD-IAAVMQE 116
Query: 414 YTQSNGRRPFGISCLIGGFDYD-GSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 590
YTQS G RPFG S LI G+D + G P LFQ +PSG Y+ WKA A G++ + FLEK +
Sbjct: 117 YTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRF 176
Query: 591 TADEVATENGAVKLAIRALLEVVQSG--QKNLXIAV 692
+ E + + A+ L E G + N+ +AV
Sbjct: 177 S--EALELDDGIHTALLTLRESFDVGMNENNVEVAV 210
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 108 bits (259), Expect = 4e-24
Identities = 65/205 (31%), Positives = 105/205 (51%)
Frame = +3
Query: 66 RYDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 245
+YD +TV+SP G L QVEYA A+++GS K++ L + +K
Sbjct: 5 QYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQ--KK 62
Query: 246 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 425
+ +D H ++ AGL +D RIL Q EC S + + V ++ + + Q TQ
Sbjct: 63 VYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQY 122
Query: 426 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEV 605
GRRPFG+ LI G+D DG+ H+ QT+PS + G +++ R +LE+N E
Sbjct: 123 YGRRPFGVGILIAGYDKDGA-HIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEK 181
Query: 606 ATENGAVKLAIRALLEVVQSGQKNL 680
+T + A+ AL + + + ++NL
Sbjct: 182 STPEQLIVHALLALRDTLPA-EENL 205
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 89.8 bits (213), Expect = 2e-18
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Frame = +3
Query: 60 SARYDXAITVFSPDGHLLQVEYAQXAVRKGS-TAXXXXXXXXXXXXXEKKSVAKLQEERT 236
SA +D IT+FSP+G + QVEYA A+ + TA +K+ L T
Sbjct: 6 SAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADT 65
Query: 237 VRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKY 416
V + + V G+ DA+ I RAQ E S K + E + + +A L Q Y
Sbjct: 66 VTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYY 125
Query: 417 TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTA 596
TQ+ R G + L +D + P +++ +P+G Y K + G FLEK
Sbjct: 126 TQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKK 185
Query: 597 DEVATENGAVKLAIRAL 647
T A++LAI AL
Sbjct: 186 KSELTSTEAIELAIEAL 202
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 81.0 bits (191), Expect = 8e-16
Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 1/207 (0%)
Frame = +3
Query: 69 YDXAITVFSPDGHLLQVEYAQXAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 248
YD A + FSPDG + QVEYAQ AV T +K +KL + ++
Sbjct: 8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRM 67
Query: 249 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 428
++D+V +A AG D L N A E +P+ ++ I +A +T
Sbjct: 68 FNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGI 127
Query: 429 GRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVA 608
RPFG ++ LF EPSG+ YE+KA A G+ + + +EK E
Sbjct: 128 S-RPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK--LKIEEL 184
Query: 609 TENGAVKLAIRALLEV-VQSGQKNLXI 686
N VK A R ++ V ++ KN+ I
Sbjct: 185 DVNQLVKEAARIIMVVRDENKDKNVQI 211
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 38.3 bits (85), Expect = 0.005
Identities = 28/142 (19%), Positives = 57/142 (40%)
Frame = +3
Query: 201 KKSVAKLQEERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEY 380
+ S R KI + D++V+ +G AD + + + A+ + +T PVT+
Sbjct: 42 RTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTENKPVTIYR 101
Query: 381 ITRYIAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAK 560
++ Y R S L+ G+D + ++ G ++ A+G +
Sbjct: 102 SSQIFRQFLYNY-----REQLSASVLVAGWDEELGGQVYAIPIGGFVSRQRSTASGSGST 156
Query: 561 TVREFLEKNYTADEVATENGAV 626
V+ FL+ + + E A+
Sbjct: 157 FVQGFLDSQWRPNLTLEECKAI 178
>U40948-5|AAA81731.2| 955|Caenorhabditis elegans Hypothetical
protein F55D10.1 protein.
Length = 955
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +3
Query: 357 EDPVTLEYITRY---IAGLKQKYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEP-SGIYY 524
++P+T E++TRY + Q +T SNGR+ + FD S TEP +G YY
Sbjct: 689 KNPITKEFVTRYTTEVHSKNQSFTDSNGRQ-----AMERFFDGATSFEYSDTEPIAGNYY 743
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/117 (17%), Positives = 48/117 (41%)
Frame = +3
Query: 231 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 410
R KI +L+D++++ +G D L Q ++ ++++ ++ +
Sbjct: 81 RDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS--RN 138
Query: 411 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 581
Y + P+ ++ G D G +F +P G +A+G + + FL+
Sbjct: 139 LYYRRFF--PYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLD 193
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/117 (17%), Positives = 48/117 (41%)
Frame = +3
Query: 231 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 410
R KI +L+D++++ +G D L Q ++ ++++ ++ +
Sbjct: 81 RDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLS--RN 138
Query: 411 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLE 581
Y + P+ ++ G D G +F +P G +A+G + + FL+
Sbjct: 139 LYYRRFF--PYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLD 193
>Z68006-7|CAA91995.2| 783|Caenorhabditis elegans Hypothetical
protein K09C8.1 protein.
Length = 783
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 552 SAKTVREFLEKNYTADEVATENGAVKL 632
S K VR LEKNYTA++ E V+L
Sbjct: 568 SKKYVRPLLEKNYTANKAKKEGKLVEL 594
>AF497831-1|AAM18109.1| 783|Caenorhabditis elegans putative Na-H
exchanger isoform 7 protein.
Length = 783
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 552 SAKTVREFLEKNYTADEVATENGAVKL 632
S K VR LEKNYTA++ E V+L
Sbjct: 568 SKKYVRPLLEKNYTANKAKKEGKLVEL 594
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 516 IYYEWKANATGRSAKTVREF----LEKNYTADEVATENGAVKLA 635
++Y K + GR K V + L K TA +V TENG VK A
Sbjct: 124 VWYINKKDKDGRKKKKVGDVISNGLPKTATASDVQTENGNVKKA 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,623,513
Number of Sequences: 27780
Number of extensions: 327446
Number of successful extensions: 801
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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