Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_L05
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319...    36   0.036
07_01_1106 - 10187609-10190041,10190292-10191932                       31   0.59 
03_06_0640 + 35230664-35231065,35231957-35232202                       30   1.8  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    29   3.1  

>12_02_0784 -
           23130783-23131273,23131701-23131778,23131913-23131969,
           23132062-23132116,23132738-23133010
          Length = 317

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 24/106 (22%), Positives = 44/106 (41%)
 Frame = +3

Query: 117 KMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHK 296
           +M  YE+  L+      E++  + ++   + +  G I  + N G R + YK        +
Sbjct: 128 RMRHYEVVYLIHEDRVEEVEDVVSKVQDFVREKKGRIWRLNNWGLRRLAYKIKKA----R 183

Query: 297 EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACT 434
            ANY +   +   K + D K    +D  I+R    K  E   + C+
Sbjct: 184 HANYILMNFEIQAKYINDFKTLLDKDERIIRHLVMKRDEAITEDCS 229


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 60  LKLIHRNLSSSXLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGII 227
           L ++ RN  S      IR  +PT +  + LR++  P  +      SH I  C G++
Sbjct: 243 LSMMGRNHKSQSTSAKIRDTIPTLDALIQLRSLSDPVFRIPAAATSHCILLCRGVL 298


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
 Frame = +3

Query: 129 YELALLLR-NMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPY----KSTAHGM-- 287
           YE  ++LR +M + E    ++R    +   G +   + N G  P+ Y    +++  G+  
Sbjct: 110 YETMVVLRPDMSEEERLALIQRYEELLVAGGAMYVEVFNRGVIPLAYSIRKRNSRTGLPS 169

Query: 288 THKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEE 419
           T+ +  Y +    T  +++  L+     D D++R   FKV++ +
Sbjct: 170 TYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSFKVRKRK 213


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 348 DLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDV 476
           D+ E   +++++ R+R  KVKE E+ A  L++E +     E +
Sbjct: 338 DIHENLVKNMEMWRERIQKVKEREQAAIRLKDEKIEKLEEEKI 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,417
Number of Sequences: 37544
Number of extensions: 300135
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)