Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L05
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 32 0.46
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 30 1.4
SB_3019| Best HMM Match : E-MAP-115 (HMM E-Value=0.71) 29 3.2
SB_46873| Best HMM Match : PAN (HMM E-Value=0.094) 28 5.6
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 28 7.4
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 27 9.8
SB_47286| Best HMM Match : DUF485 (HMM E-Value=5.5) 27 9.8
SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22) 27 9.8
SB_33062| Best HMM Match : DUF485 (HMM E-Value=7.5) 27 9.8
SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 27 9.8
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 27 9.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 27 9.8
SB_45699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_41303| Best HMM Match : DUF485 (HMM E-Value=2) 27 9.8
SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5) 27 9.8
SB_39698| Best HMM Match : Rho_RNA_bind (HMM E-Value=3.4) 27 9.8
SB_25779| Best HMM Match : DUF485 (HMM E-Value=5.1) 27 9.8
SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3) 27 9.8
SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35) 27 9.8
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 31.9 bits (69), Expect = 0.46
Identities = 30/154 (19%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Frame = +3
Query: 45 QNLLNLKLIHRNLSSSXLYVIIRIKMPTYELALLLRNMPKPELKTSLKRISHAIFDCGGI 224
++L N + ++ + + + + + + +Y+ + + +L+T H +
Sbjct: 1084 ESLKNQITVIQSENEANVSIHVESQTESYKQEVREKEYEIEKLRTERATFEHQLEGMTSQ 1143
Query: 225 IRNI--ENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRF 398
I I EN G + +S A G + I + D + + D +E+Y+ ++ +RQ+
Sbjct: 1144 ITRIKAENEGHIKLVLESNAEGYESQ-----IKEKDLVIQQLRDEREQYENQIESLRQQI 1198
Query: 399 FKVKEEERKACTLEEELLPPAYREDV---QKMIQ 491
++EE K TL+ +R ++ +K+IQ
Sbjct: 1199 VVIREESNKTMTLQLVSRTEGFRTEINEKEKVIQ 1232
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 360 EYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQ 479
EYKR ++ ++++ +V+ E +A L+EE++ + DVQ
Sbjct: 324 EYKRQLEHLQEQLEQVRNERNEAIRLKEEIVDVNHAWDVQ 363
>SB_3019| Best HMM Match : E-MAP-115 (HMM E-Value=0.71)
Length = 200
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +2
Query: 182 IEEDLTCYIRLRRNHQKHRKFRISTNALQVHCTWYDPQRSQLFYL*DRYTHQSSYRLERG 361
+ + L Y R+R+NHQ R+ + N LQ + R QL D+ HQ L++
Sbjct: 33 MHDQLLVYKRMRQNHQ--RQLQQLENKLQAE---MNDHRRQLDKEYDQMVHQFEKELDKL 87
Query: 362 IQKRR*HSATKIFQSQRRRKKSL 430
+ + K+ Q Q KK L
Sbjct: 88 RTRHKAEVEQKVKQMQSDEKKLL 110
>SB_46873| Best HMM Match : PAN (HMM E-Value=0.094)
Length = 143
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 241 FSMFLMIPPQSN--IACEILFNEVFNSGFGMFRNNKASSYVGIFIRIITYKXLEDKFRCI 68
FS+ + P SN ACE+L +++NS + NNK Y +++T LE + +
Sbjct: 78 FSLNMAKRPDSNSKYACEVLGTDMYNSPSKIQNNNKWIHYSIDVSKVMTRGKLEKQSKGS 137
Query: 67 N 65
N
Sbjct: 138 N 138
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 348 DLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQ 491
DL+E + D+ + Q F K+ EEE A L E L + V++ ++
Sbjct: 1059 DLRENFSADLSELEQNF-KIIEEENSALKLNVEALESELQLSVKEKLE 1105
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 357 EEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQ 491
EE R + RQR +++E+ER+ E+ LL AYR +++++
Sbjct: 1628 EEASRSEEYERQRQLELQEKERRNKEEEDNLL-DAYRRKQEQLLE 1671
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 59 VNFELGVIMVIAVSFGKP 76
>SB_47286| Best HMM Match : DUF485 (HMM E-Value=5.5)
Length = 99
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 31 VNFELGVIMVIAVSFGKP 48
>SB_34032| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-22)
Length = 673
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 555 VNFELGVIMVIAVSFGKP 572
>SB_33062| Best HMM Match : DUF485 (HMM E-Value=7.5)
Length = 168
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 50 VNFELGVIMVIAVSFGKP 67
>SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 895
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 781 VNFELGVIMVIAVSFGKP 798
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 336 KAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQK 482
K ++D+KE+Y+ + V++ K+K++ + T E+E Y E ++K
Sbjct: 1183 KNILDVKEQYEAQLARVKKERNKLKQKYEE-LTEEDEEEDAIYEETIEK 1230
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 1403 VNFELGVIMVIAVSFGKP 1420
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 556 VNFELGVIMVIAVSFGKP 573
>SB_45699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 55 VNFELGVIMVIAVSFGKP 72
>SB_41303| Best HMM Match : DUF485 (HMM E-Value=2)
Length = 199
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 81 VNFELGVIMVIAVSFGKP 98
>SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5)
Length = 374
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 256 VNFELGVIMVIAVSFGKP 273
>SB_39698| Best HMM Match : Rho_RNA_bind (HMM E-Value=3.4)
Length = 128
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 60 VNFELGVIMVIAVSFGKP 77
>SB_25779| Best HMM Match : DUF485 (HMM E-Value=5.1)
Length = 236
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 58 VNFELGVIMVIAVSFGKP 75
>SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3)
Length = 270
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 54 VNFELGVLAVFSVVIGRP 1
VNFELGV+ V +V G+P
Sbjct: 152 VNFELGVIMVIAVSFGKP 169
>SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)
Length = 300
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 324 DTPTKAVIDLKEEYKRDVDIVRQRFFKVKEE 416
D+PTK ++ EY ++V++ ++ F +K++
Sbjct: 153 DSPTKRATEVDSEYTQEVEMSNRKTFDMKKD 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,607
Number of Sequences: 59808
Number of extensions: 372984
Number of successful extensions: 870
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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