Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L03
(823 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 301 4e-82
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 76 4e-14
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009) 33 0.28
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44) 30 2.6
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8) 29 4.6
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092) 28 8.0
>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
Length = 291
Score = 301 bits (739), Expect = 4e-82
Identities = 138/234 (58%), Positives = 179/234 (76%)
Frame = +2
Query: 74 YKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD 253
Y + + Y KQ F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD
Sbjct: 58 YSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRD 117
Query: 254 QKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYK 433
K++KL+ STVLG +G D LTLT+ + AR+QMYEH+H K+M+ A+AQMLSTMLYY+
Sbjct: 118 SPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYR 177
Query: 434 RFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQ 613
RFFPYY N+LAGLDS+GKGCV+S+DP+G R +RAGGSA+A LQPLLDNQIG KN +
Sbjct: 178 RFFPYYTYNILAGLDSEGKGCVFSFDPVGSYEREVYRAGGSASALLQPLLDNQIGFKNQE 237
Query: 614 NVTEAPLTREKALALLKDVFISAAERDIYTGDSIYILIITAHGIQEEKFELRKD 775
V PLTR+KA+AL+KDVF SAAERDIYTGD++ I ++++ G+ EE F LR+D
Sbjct: 238 GVPHTPLTRDKAVALVKDVFTSAAERDIYTGDAVIINVVSSEGVSEEAFPLRRD 291
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 75.8 bits (178), Expect = 4e-14
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Frame = +2
Query: 158 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 337
NG +I+A+ G + I AD RL + D +K+F++ E +G G D T++
Sbjct: 77 NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSR 136
Query: 338 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLD-SDGKGCVYSYDP 514
L+ R+ +YE + + M+S +LY +RF PY+V V+AGLD + + S D
Sbjct: 137 LKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDL 196
Query: 515 IG-HCARHNFRAGGSAAAQLQPLLDN 589
IG +F G+ + Q+ + ++
Sbjct: 197 IGCPMETKDFVVSGTCSEQMYGMCES 222
>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/92 (22%), Positives = 47/92 (51%)
Frame = +2
Query: 155 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 334
D+G + +A ++ D+R + G I ++ KK+ +++ + G D R
Sbjct: 26 DHGTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWER 85
Query: 335 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYY 430
LL + ++YE + + ++ A +++L+ M+YY
Sbjct: 86 LLAKQCRIYELRNKERISVAAASKILANMVYY 117
>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
Length = 938
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G S++ I + ++ ADT S G R+ +L +++E+T++GA G + D + +L
Sbjct: 875 GTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYIKSVL 934
Query: 341 QARM 352
+ ++
Sbjct: 935 EQKV 938
>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
Length = 246
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 684 QNVTFIPETPSTFSSSLHMVFKKRNLNFAK 773
+N+TFIP+ FS + M+ K +L F K
Sbjct: 94 ENITFIPDGNGEFSEGMGMLVDKSDLGFGK 123
>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
Length = 845
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 173 VAIAGD--DYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
VA+ D D +GAD R G +IY RD + ++ S A C C TL L
Sbjct: 249 VALEADLRDRGWLGADLRSKGGVAIYVRDTISVIEIKRSE---AYECLCVTLDL 299
>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 420 IVESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPV 298
+V + A + +V+ LL SC +C L+ R +KV HQ+ +
Sbjct: 165 MVSTAKAYSVIVLFLLVSCFLLCFLSYFRLLKVTRRHQRQI 205
>SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)
Length = 230
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 312 HQQPVAPNTVLSDNLNSFFWSLVYMENPVLRRVSAP 205
+Q+ P+ VLS N + LV ++ PVL++V+AP
Sbjct: 28 YQKLKTPHVVLSVNRFFYLRDLVMIQIPVLQKVAAP 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,815,086
Number of Sequences: 59808
Number of extensions: 564399
Number of successful extensions: 1486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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