Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_L03
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 176 1e-44
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 176 1e-44
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 83 2e-16
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 65 5e-11
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 49 5e-06
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z74041-2|CAA98521.1| 237|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 28 7.0
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 9.3
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 9.3
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 9.3
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 176 bits (429), Expect = 1e-44
Identities = 90/219 (41%), Positives = 139/219 (63%), Gaps = 3/219 (1%)
Frame = +2
Query: 128 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 304
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 305 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 484
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 485 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LTREKALALL 661
GKG V+SYDPIG R + A G+A + P LD QIG + E P LT ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 662 KDVFISAAERDIYTGDSIYILIITAHGIQEEKF-ELRKD 775
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 176 bits (429), Expect = 1e-44
Identities = 90/219 (41%), Positives = 139/219 (63%), Gaps = 3/219 (1%)
Frame = +2
Query: 128 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 304
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 305 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 484
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 485 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP-LTREKALALL 661
GKG V+SYDPIG R + A G+A + P LD QIG + E P LT ++A++L+
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERPELTLDRAISLM 219
Query: 662 KDVFISAAERDIYTGDSIYILIITAHGIQEEKF-ELRKD 775
KD F AAER+I TGD I+++I A KF LR+D
Sbjct: 220 KDSFRGAAEREISTGDKIHLVIAEAGKPVVVKFLPLRED 258
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 83.0 bits (196), Expect = 2e-16
Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 1/206 (0%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 521 -HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLTREKALALLKDVFISAAERDI 697
A +F A G+ L + +N +N+ L A ++L S ERD
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCENFW----RENMKPDELFEATAQSIL-----SCLERDA 178
Query: 698 YTGDSIYILIITAHGIQEEKFELRKD 775
+G + IT + + R D
Sbjct: 179 ASGWGAVVYTITKDKVNVSTIKARMD 204
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 65.3 bits (152), Expect = 5e-11
Identities = 55/207 (26%), Positives = 93/207 (44%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 521 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLTREKALALLKDVFISAAERDIY 700
+R A GS + +Q LD+Q LT E+ A++K A RD
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ---------WRPNLTLEECKAIVKQAVGLATFRDGS 192
Query: 701 TGDSIYILIITAHGIQEEKFELRKD*F 781
+G + + +I G Q E F K F
Sbjct: 193 SGGVVRLAVINKAGSQFELFRPDKPGF 219
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 48.8 bits (111), Expect = 5e-06
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 1/191 (0%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 341 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 518 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLTREKALALLKDVFISAAERDI 697
G F A GS + +L+ + +T+++A L++ + D
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDF---------KVDMTKDEAEKLVQRALEAGMHGDN 213
Query: 698 YTGDSIYILII 730
+G+S+ ++II
Sbjct: 214 ASGNSLNLVII 224
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 8e-05
Identities = 31/130 (23%), Positives = 56/130 (43%)
Frame = +2
Query: 200 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 379
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 380 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 559
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 560 AAQLQPLLDN 589
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -2
Query: 564 AAAEPPARKLWRAQCPIGS*LYT----HPLPSLSKPANTLDT*YGKNRL*YNIV 415
AAA PPA G +Y H +PSL P T D +GK L Y +V
Sbjct: 229 AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLITPMRTKDNVFGKIALVYGVV 282
>Z74041-2|CAA98521.1| 237|Caenorhabditis elegans Hypothetical
protein T03F7.6 protein.
Length = 237
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 720 FSSSLHMVFKKRNLNFAKINLLQKSNKYFTQ 812
F + + F+ R LN +IN+ Q N+YF Q
Sbjct: 201 FEEKVELHFEFRQLNGNRINISQSQNEYFEQ 231
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 417 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 256
V SI + V+ L+ S + ++ C ++ + V + + N VL +N FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275
Query: 255 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 151
L++++ P V PI S + +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310
>Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical
protein R04D3.7 protein.
Length = 320
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 68 KSYKMLSVNENFPEYAVPGAKQHRFEPYADNG 163
KSY+ S+N+N EY+V G + F P + NG
Sbjct: 159 KSYE--SINKNLEEYSVIGIMNYSFLPSSING 188
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 505 LRPYRTLCAP*LPRWWFRCCTAATAPRQSNW-LKEYAECNRSSFD*GKGP 651
LRP+ C P L ++ RC + A R ++ EY C RS + G P
Sbjct: 259 LRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEYFRCLRSEYPNGNVP 308
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,063,506
Number of Sequences: 27780
Number of extensions: 414010
Number of successful extensions: 1266
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -