Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K22
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.1  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   8.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 579 ELSTSNDNDLCEVGASVARCLVKFGD 656
           E S SN+N+  E G S   C + FGD
Sbjct: 457 EESDSNNNNNKEEGNSCQYCNIAFGD 482



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 392 RDLDKTITPCAS 427
           +D++ T+TPCAS
Sbjct: 124 KDMETTLTPCAS 135


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 326 TILEMDIKAEVSKQLSLIDELLR-DLDKTITPCASK 430
           TIL + +  E +K+L   D+LLR D    +  C+S+
Sbjct: 362 TILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSE 397


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -3

Query: 430 FTCTWCNR 407
           F+CT+CNR
Sbjct: 36  FSCTYCNR 43


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 188 KYHNRGKTVQRLTTLMAAEAPVL 256
           K HN+ ++V++ + L    AP+L
Sbjct: 129 KQHNQQQSVEKSSKLKNKSAPIL 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,919
Number of Sequences: 336
Number of extensions: 3830
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)