Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    29   1.0  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    29   1.0  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    27   3.2  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   4.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   4.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   7.4  

>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 447 EEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIEL 584
           EE  Q     S   + K N   +  GDD+ V + D  +YLG I +L
Sbjct: 42  EEPFQKEAGRSYYRSLKKNDVIYRVGDDITVHDGDSSFYLGVICKL 87


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 EMDIKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKRRRNTG 463
           E  I+ +++ ++ L+DE LR L   +  C   +NE  + +  G
Sbjct: 16  EHSIREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEKEHG 58


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +2

Query: 308 CV*IIKTILEMD---IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKRRRNTGCNAR 475
           C+      +E+D    KA V K  +L   +L+D +K I  C       +R  NTG N R
Sbjct: 452 CIRDCNKAIELDPNFAKAYVRKAQALF--MLKDYNKCIDACNEASEVDRREPNTGKNLR 508


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +3

Query: 432 RMKKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTSN-DNDL 608
           R     ++T    P ST   ++NN NP +   +    N +      T++  +      DL
Sbjct: 132 RQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTPETLWQDL 191

Query: 609 CEVGASVARCL 641
           C +  S A  L
Sbjct: 192 CLLSESFANSL 202


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 420 VQVKRMKKKEEETQDAMPDSTTSTEKNN 503
           V  + ++++EEE +DA P+   +++KN+
Sbjct: 77  VDEEELEEEEEEEEDATPEPVVTSKKNS 104


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 468 MPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTS---NDNDLCEVGASVARC 638
           +P +TTS+ K    P +  +   +   D  Y   T +E   S   N N+L +VG+S A  
Sbjct: 758 VPTNTTSSVKLPQQPSNEDEKERITTAD--YADSTSLERLESQEPNRNELVQVGSSNAGN 815

Query: 639 LVKFGDGTHSWAPVSSLKLLS 701
               G   H  +PV   K +S
Sbjct: 816 TTSVGMNEHEKSPVKLSKGVS 836


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 142 CN*REFLKNK*TDKFNN*LFIFYKLYLQQINPKE 41
           C+  +F+ +     F N +F F ++Y+Q+INP +
Sbjct: 775 CDRYDFVNDLVFYLFRNNMFQFIEIYVQRINPSK 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,323
Number of Sequences: 5004
Number of extensions: 58089
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)