Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K22
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.48 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.48 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.48 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.48 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.8  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 493 SVLVVESGIASCVSSSFFFILFT 425
           SVL  ES ++SCV     F+LF+
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFS 27


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 493 SVLVVESGIASCVSSSFFFILFT 425
           SVL  ES ++SCV     F+LF+
Sbjct: 5   SVLQAESDVSSCVIFGVLFVLFS 27


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 499 FFSVLVVESGIASCVSSSFFFILFTCTWCN 410
           FF++ +V +   +C+  + F +LF   +CN
Sbjct: 25  FFTMYLVRAFCRNCIHPTVFSVLFWLGYCN 54


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 499 FFSVLVVESGIASCVSSSFFFILFTCTWCN 410
           FF++ +V +   +C+  + F +LF   +CN
Sbjct: 473 FFTMYLVRAFCRNCIHPTVFSVLFWLGYCN 502


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 772 GPVAGPSRRLHTTHMMRPSSAGGTLSSFSDDTGAHECV 659
           G   GPS R+H T+M + +S         D  G + CV
Sbjct: 649 GRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCV 686


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 326 TILEMDIKAEVSKQLSLIDELLR-DLDKTITPCASK 430
           TIL + +  E SK+L   DEL+R D    +  C+S+
Sbjct: 382 TILTVQLIVEFSKRLPGFDELMREDQIALLKACSSE 417


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 475 TQQLAPRKTMLTHSTAEMMYLW 540
           TQ+   +   L+H+T EM++ W
Sbjct: 174 TQECKLQMESLSHTTDEMIFQW 195


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 404 KTITPCASKKNEKKRRRNTGCNARLNN*HREKQC*PIPLR 523
           +T       K   K   +    A+L N H    C P+P+R
Sbjct: 191 ETFEGTGPSKKLAKAAASKAALAKLRNVHSSSFCIPLPVR 230


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 332 LEMDIKAEVSKQLSLIDELLRDLDKTITPCASK 430
           L M I   + +     +  L +  ++I PCASK
Sbjct: 53  LSMTIPPSIDRSSIHEESYLAESSRSIDPCASK 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,880
Number of Sequences: 438
Number of extensions: 5035
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)