Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K17
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    57   3e-09
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    32   0.085
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    28   1.4  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   5.6  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.4  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 13/122 (10%)
 Frame = +1

Query: 472 IFLWC--WY-EQYQTNIIFAYLRKDKKS------NKIVTED--HRVPNGRMFKYVSSPHR 618
           +FLW   W    Y  NI++   R   K       + + +E+  +R+P G +F+YVS P+ 
Sbjct: 161 MFLWLMGWLGNMYHDNILYDLRRSSNKKKDPDNLDTVQSENSYYRIPYGGLFQYVSCPNY 220

Query: 619 MCEIIMY--TVLVFLITTKTFVCIYLWVLSNQIQTGIHAHEWYKKTFKNYPAKRTAVFPY 792
            CE I +    L    + + F   +L  +   +   + AH+WY K F  YPA R A+ P+
Sbjct: 221 FCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKKFPKYPANRRAIIPF 280

Query: 793 VL 798
           ++
Sbjct: 281 LM 282


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 1/139 (0%)
 Frame = +1

Query: 298 FAKS-SKMNISHYFAGIIHYFACIVVCVGQAPLFCGSQNREKVTWIDTKTTILFVPCTLI 474
           F KS SKM   HY  G + Y    +     A L CG ++ E     +T +++ FV   + 
Sbjct: 127 FRKSGSKMLAGHYLLGYLFYTHTFL-----ALLLCGRRSYE-----NTMSSMQFVGLGIY 176

Query: 475 FLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDHRVPNGRMFKYVSSPHRMCEIIMYTVLVF 654
            +   ++    N    +L   K  ++ +     +  G  FK+++ PH + EII+YT +  
Sbjct: 177 AIGSIWQ----NASHEHLIAQKNHSQYLV----LKKG-CFKWITGPHYLGEIIVYTGIAL 227

Query: 655 LITTKTFVCIYLWVLSNQI 711
           +        +  WVL N +
Sbjct: 228 IAQHWLIWLVLGWVLCNMV 246


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 230 FWHSLFSPCNAYGDYMRRIIYKYLQSPAK*TLA 328
           FW SL +  N   D ++ +IYK  +SP+K  LA
Sbjct: 412 FWFSLKAKTNDTLDAIKALIYKTYRSPSKEILA 444


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +1

Query: 427 WIDTKTTILFVPCTLIFLWCWYEQY---QTNI-IFAYLRKDKKSNKIVTEDHRVPNGRMF 594
           W+  K T+L   C  ++   WY  Y    +++ I  Y  +  K    +    R+PN  +F
Sbjct: 156 WLGNKDTVLQADCGAVYKISWYTTYIAWASDLGITVYSTEFGKVLGRLEPPKRLPNDEIF 215

Query: 595 KY 600
            Y
Sbjct: 216 PY 217


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 447 CSFCINPCHFFSILTSTKQWCLS-NTHNYTCKIVYDSSE 334
           C      C F ++LT+T+++CL     + T K++  SS+
Sbjct: 454 CKSPAQKCLFSNLLTATRKFCLERQKDDVTFKVLLQSSK 492


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 622 CEIIMYTVLVFLITTKTFVCIYL 690
           C I+ Y V  + +TT TF C YL
Sbjct: 25  CSILKYKV--YFVTTDTFYCKYL 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,888
Number of Sequences: 5004
Number of extensions: 71148
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)