Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K17
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0880 + 29046842-29046990,29047467-29047701,29048132-290482...    63   3e-10
07_03_0455 + 18374327-18374533,18375136-18375482,18375959-183761...    56   3e-08
07_01_0442 - 3348638-3349126,3349978-3350322                           40   0.002
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704...    32   0.47 
11_01_0535 + 4234282-4235082                                           31   0.83 

>04_04_0880 +
           29046842-29046990,29047467-29047701,29048132-29048227,
           29048887-29048958,29049091-29049195
          Length = 218

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 23/197 (11%)
 Frame = +1

Query: 274 YETYYLQVFAKSSKMNISHYFAGIIHYFACIVV----CVGQAPLFCGSQ-------NREK 420
           YET ++  ++ S++M+I  Y  G+ +Y A  +     C+ +A  +   Q        R +
Sbjct: 26  YETEHVFHYSPSARMHIVGYLTGLFYYVAAPLSLASSCIPEAAEYLQGQVAEFIVKGRAR 85

Query: 421 VTWIDTKTTILFVPC----------TLIFLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDH 570
           +  +   ++ L  P            +IF+W    Q + + I   LR+ K S++ V    
Sbjct: 86  MPDLVIDSSSLLQPLLKLGWTQWIGAVIFIWGSLHQIRCHAILGTLREHKDSDEYV---- 141

Query: 571 RVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVC--IYLWVLSNQIQTGIHAHEWYK 744
            +P G  F  VS PH + E+++Y  ++     +      ++++V++N     +  H+WY 
Sbjct: 142 -IPCGDWFNRVSCPHYLAELVIYFGMLVASGGEDIPVWFLFVFVITNLSFAAVETHKWYL 200

Query: 745 KTFKNYPAKRTAVFPYV 795
           + F++YP  R A+ P+V
Sbjct: 201 QKFEDYPRSRYAIIPFV 217


>07_03_0455 +
           18374327-18374533,18375136-18375482,18375959-18376193,
           18376629-18376724,18377392-18377463,18377596-18377700
          Length = 353

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
 Frame = +1

Query: 469 LIFLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDHRVPNGRMFKYVSSPHRMCEIIMYTVL 648
           +IF+W    Q + + I   LR+ K  ++ V     +P G  F  VS PH + E+++Y  +
Sbjct: 247 VIFIWGSLHQIRCHAILGSLREHKDYDEYV-----IPCGDCFNRVSCPHYLAELVIYFGM 301

Query: 649 VFLITTKTFVC--IYLWVLSNQIQTGIHAHEWYKKTFKNYPAKRTAVFPYV 795
           +     +      ++++V++N     +  + WY + F++YP  R A+ P+V
Sbjct: 302 LVASGAEDIPVWFLFIFVITNLSFAAVETYNWYLQKFEDYPRSRYAIIPFV 352


>07_01_0442 - 3348638-3349126,3349978-3350322
          Length = 277

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +1

Query: 568 HRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVCIYLWVLSNQIQTGIHAHEWYKK 747
           +R+P G +F   + PH + EI+ +     +  T   + +    ++           WY+ 
Sbjct: 201 YRIPTGGLFGLAACPHYLFEIVGFFGFAMIAQTAHALAVASGTVAYLAGRSCATRRWYES 260

Query: 748 TFKNYPAKRTAVFPYVL 798
            F+++P    A+ PY+L
Sbjct: 261 KFEDFPDSIKALVPYIL 277


>08_02_1053 -
           23968372-23968442,23969245-23969294,23970396-23970457,
           23970527-23970709,23970737-23970901,23972235-23972408
          Length = 234

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 472 IFLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDHRVPNGR--MFKYVSSPHRM 621
           +F+ CW E        AYL +  KSNK     H++   +  +F Y +SP  M
Sbjct: 146 LFMHCWNELKNQPKWHAYLEQLDKSNKRKNVSHKISYAKASLFTYCASPRNM 197


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
 Frame = +1

Query: 568 HRVPNGRMFKYVSSPHRMCEIIMYTVLVFLITTKTFVCIYLWVLSNQIQTGIHAHEWYKK 747
           +++P   +F  V+ P+   E + +     +  T      +L+   N          WY  
Sbjct: 189 YQIPKDGLFDLVACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYIS 248

Query: 748 TFKN-YPAKRTAVFPYV 795
            F + YPA R A  PY+
Sbjct: 249 KFGDKYPASRKAFIPYI 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,700
Number of Sequences: 37544
Number of extensions: 374131
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)