Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K17
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 472 IFLWCWYEQYQTNIIFAYLR 531
           +FL CW   +  NI+ +Y +
Sbjct: 280 VFLICWVPFFCVNIVTSYCK 299


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 488 GMNSIKQTSYSHISEKTKNQIKLLQKITVY 577
           G N +   S+SH S   K+ I L   ITV+
Sbjct: 270 GWNELLIASFSHRSIDVKDGIVLATGITVH 299


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 488 GMNSIKQTSYSHISEKTKNQIKLLQKITVY 577
           G N +   S+SH S   K+ I L   ITV+
Sbjct: 270 GWNELLIASFSHRSIDVKDGIVLATGITVH 299


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/25 (24%), Positives = 18/25 (72%)
 Frame = -1

Query: 485 HQRKIKVQGTNKIVVFVSIHVTFSL 411
           + ++++++   + ++F ++HVTF L
Sbjct: 156 YHKELQIELVREEILFDTVHVTFKL 180


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 448 ILFVPCTLIFLWCWYEQYQTNIIFAYLRKDKKSNKIVTEDHRVPNGRMFKYVSSP 612
           I  V C +       E    N  +   R  KKS K  ++D +V + +     +SP
Sbjct: 306 IYLVMCFVFVFAALLEYAAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSP 360


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 414 SILTSTKQWCLSNTHNYTCKIVYDSSEIVANVHFA 310
           S +TSTK   + N  N TC +     +     H A
Sbjct: 331 SPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLA 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,475
Number of Sequences: 438
Number of extensions: 5069
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)