Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_K15
(388 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra... 33 0.003
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 26 0.42
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 26 0.55
AY341205-1|AAR13769.1| 285|Anopheles gambiae period protein. 25 0.73
AY341204-1|AAR13768.1| 285|Anopheles gambiae period protein. 25 0.73
AY341203-1|AAR13767.1| 285|Anopheles gambiae period protein. 25 0.73
AY341202-1|AAR13766.1| 285|Anopheles gambiae period protein. 25 0.73
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript... 25 0.73
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 25 1.3
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 24 2.2
M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles ... 22 6.8
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein. 22 6.8
>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
transcriptase protein.
Length = 1049
Score = 33.5 bits (73), Expect = 0.003
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -2
Query: 219 ILITVYINYFSFDILCVYIPPPPNGKF-TINLLKDSCSKFV-----SNNYLIIGDFNAHH 58
I + V N ++ VYIPP + + T+ L D S F S+ +IGDFN
Sbjct: 172 ICVRVACNNAHLYVMVVYIPPQLSSEISTLRSLHDCISSFTLRLKPSDLLFVIGDFNQPS 231
Query: 57 ASWS 46
SWS
Sbjct: 232 ISWS 235
>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
protein.
Length = 1009
Score = 26.2 bits (55), Expect = 0.42
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 180 ILCVYIPPPPN-GKFTINLLKDSCSKFVSNNYLIIGDFNAHHASWS 46
++ VY PP + +F I L + + ++I GDFNA ASW+
Sbjct: 83 VVSVYAPPRFSMEEFQIMLDNTVMAVTGIHKFVIGGDFNAWSASWN 128
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 25.8 bits (54), Expect = 0.55
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -2
Query: 168 YIPPPPN-GKFTINLLKDSCSKFVSNNYLIIGDFNAHHASW 49
Y PP N +F L F ++ GDFNA H W
Sbjct: 102 YAPPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEW 142
>AY341205-1|AAR13769.1| 285|Anopheles gambiae period protein.
Length = 285
Score = 25.4 bits (53), Expect = 0.73
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 135 INLLKDSCSKFVSNNYLIIGDFNAHHASWSXKS 37
+NLL +S F + +++G+ + HH + KS
Sbjct: 124 LNLLNESDFTFSERDSVMLGEISPHHEYFDSKS 156
>AY341204-1|AAR13768.1| 285|Anopheles gambiae period protein.
Length = 285
Score = 25.4 bits (53), Expect = 0.73
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 135 INLLKDSCSKFVSNNYLIIGDFNAHHASWSXKS 37
+NLL +S F + +++G+ + HH + KS
Sbjct: 124 LNLLNESDFTFSERDSVMLGEISPHHEYFDSKS 156
>AY341203-1|AAR13767.1| 285|Anopheles gambiae period protein.
Length = 285
Score = 25.4 bits (53), Expect = 0.73
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 135 INLLKDSCSKFVSNNYLIIGDFNAHHASWSXKS 37
+NLL +S F + +++G+ + HH + KS
Sbjct: 124 LNLLNESDFTFSERDSVMLGEISPHHEYFDSKS 156
>AY341202-1|AAR13766.1| 285|Anopheles gambiae period protein.
Length = 285
Score = 25.4 bits (53), Expect = 0.73
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 135 INLLKDSCSKFVSNNYLIIGDFNAHHASWSXKS 37
+NLL +S F + +++G+ + HH + KS
Sbjct: 124 LNLLNESDFTFSERDSVMLGEISPHHEYFDSKS 156
>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
protein.
Length = 1022
Score = 25.4 bits (53), Expect = 0.73
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 99 SNNYLIIGDFNAHHASWS 46
S+ +++ GDFNA +SW+
Sbjct: 113 SSKFVVAGDFNAWSSSWA 130
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 24.6 bits (51), Expect = 1.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 87 LIIGDFNAHHASW 49
L+ GDFNA H +W
Sbjct: 117 LLAGDFNAWHTAW 129
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 23.8 bits (49), Expect = 2.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 93 NYLIIGDFNAHHASW 49
N ++ GDFNA H +W
Sbjct: 115 NVVLGGDFNAWHEAW 129
>M93689-2|AAA29367.1| 975|Anopheles gambiae protein ( Anopheles
gambiae T1 retroposon. ).
Length = 975
Score = 22.2 bits (45), Expect = 6.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = -2
Query: 240 SQYHFQNILITVYINYFSFDILCVYIPP--PPNGKFTINL---LKDSCSKFVSNNYLII- 79
+Q + + I V F + VY+PP + + +L + D+ N++LI+
Sbjct: 94 NQPTLEALCIRVSFPKFRLYVGIVYVPPYLSSDRNYFESLSAFIXDAYMHMKPNDHLILL 153
Query: 78 GDFNAHHASWS 46
GDFN WS
Sbjct: 154 GDFNQPALGWS 164
>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
Length = 3361
Score = 22.2 bits (45), Expect = 6.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2
Query: 95 FETNLEHESFNKLIVNLPFGGGG 163
+ + E+E+ N + PFG GG
Sbjct: 2057 YSIDYEYENDNLRSIKYPFGAGG 2079
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,118
Number of Sequences: 2352
Number of extensions: 3746
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 29929410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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