Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K15
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.9  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   6.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.5  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    20   8.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    20   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 225 QNILITVYINYFSFDILCVYIPPPPNGK 142
           Q+ +I    N   +  L V IPPPP+ +
Sbjct: 744 QSTVIQTGANVNLWQPLSVSIPPPPSAQ 771


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIVSSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 63  VH*SHQLLNNYLKQI 107
           +H SH  + N+LKQ+
Sbjct: 93  LHVSHTCIENHLKQL 107


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  RVTSSIIDSXNSRKHDVH*SHQLLNNYLKQI*NMN 119
           ++ SS+ ++ N   ++ + ++   NNY K   N+N
Sbjct: 80  KIISSLSNNYNYSNYNNYNNNNNYNNYKKLYYNIN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,645
Number of Sequences: 438
Number of extensions: 1218
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)