Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_K14
(827 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 263 3e-69
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 259 5e-68
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 258 2e-67
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 257 2e-67
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 256 4e-67
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 255 9e-67
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 255 1e-66
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 243 5e-63
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 235 1e-60
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 229 5e-59
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 223 4e-57
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 221 2e-56
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 220 4e-56
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 214 3e-54
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 212 1e-53
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 210 4e-53
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 202 6e-51
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 202 8e-51
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 197 3e-49
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 197 3e-49
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 192 1e-47
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 186 6e-46
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 184 2e-45
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 182 7e-45
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 182 7e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 175 8e-43
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 171 1e-41
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 171 2e-41
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 166 5e-40
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 163 6e-39
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 161 2e-38
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 161 2e-38
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 3e-38
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 155 1e-36
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 149 6e-35
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 140 5e-32
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 139 9e-32
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 135 1e-30
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 124 2e-27
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 124 3e-27
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 123 6e-27
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 121 2e-26
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 121 2e-26
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 118 1e-25
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 116 7e-25
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 115 1e-24
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 113 4e-24
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 111 2e-23
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 111 2e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 111 3e-23
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 111 3e-23
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 111 3e-23
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 109 8e-23
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 109 1e-22
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 105 1e-21
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 103 5e-21
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 102 1e-20
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 101 2e-20
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 101 3e-20
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 99 1e-19
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 99 1e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 98 2e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 96 1e-18
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 96 1e-18
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 95 1e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 95 2e-18
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 94 3e-18
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 93 6e-18
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 93 6e-18
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 93 6e-18
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 93 6e-18
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 93 8e-18
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 91 3e-17
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 91 4e-17
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 90 5e-17
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 90 7e-17
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 89 2e-16
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 87 5e-16
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 87 5e-16
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 85 2e-15
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 84 4e-15
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 81 3e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 81 4e-14
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 80 6e-14
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 77 4e-13
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 76 9e-13
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 74 4e-12
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 74 5e-12
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 73 7e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 73 1e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 72 2e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 64 4e-09
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 63 9e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 2e-07
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 58 2e-07
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 49 1e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 47 5e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 5e-04
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 44 0.006
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 42 0.019
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 38 0.31
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 36 1.6
UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing u... 35 2.9
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 35 2.9
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 34 5.0
UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 34 5.0
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 33 6.6
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 33 8.7
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 263 bits (645), Expect = 3e-69
Identities = 138/252 (54%), Positives = 160/252 (63%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
G +G+IGT+ SL IRA G PG+L+G QIYN VTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 83
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 431
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGAS 143
Query: 432 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 611
VDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 144 VDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVL 203
Query: 612 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQER 791
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH+++
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYA 263
Query: 792 GKKETXGCLGII 827
GKKE G +G++
Sbjct: 264 GKKEPFGYMGMV 275
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 259 bits (635), Expect = 5e-68
Identities = 134/252 (53%), Positives = 157/252 (62%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWL 82
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 431
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 432 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 611
VDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVL 202
Query: 612 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQER 791
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH+++
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYA 262
Query: 792 GKKETXGCLGII 827
GKKE G +G++
Sbjct: 263 GKKEPFGYMGMV 274
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 258 bits (631), Expect = 2e-67
Identities = 134/255 (52%), Positives = 156/255 (61%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
F G+ SG++G S SL IR G PGSLIG QIYN VT+HA
Sbjct: 4 FMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFG 63
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H
Sbjct: 64 NWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHG 123
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 124 GMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSL 183
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIISH+I
Sbjct: 184 PVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIISHMIF 243
Query: 783 QERGKKETXGCLGII 827
E GKKET G LG+I
Sbjct: 244 NESGKKETFGMLGMI 258
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 257 bits (630), Expect = 2e-67
Identities = 134/224 (59%), Positives = 146/224 (65%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
F G+ +G++GTS SL IRA G PGSLIG QIYN VTAHA
Sbjct: 17 FIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFG 76
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 77 NWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHG 136
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 137 GSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSL 196
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 734
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 197 PVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 256 bits (628), Expect = 4e-67
Identities = 134/258 (51%), Positives = 161/258 (62%), Gaps = 1/258 (0%)
Frame = +3
Query: 57 SLFFL-GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXX 233
+L+ L G +G++GT+ SL IRA G PG+L+G IYN VTAHA
Sbjct: 17 TLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIG 76
Query: 234 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N
Sbjct: 77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNY 136
Query: 414 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 593
+H G SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 137 SHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLL 196
Query: 594 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 773
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH
Sbjct: 197 LSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISH 256
Query: 774 IISQERGKKETXGCLGII 827
I++ GKKE G +G++
Sbjct: 257 IVTYYSGKKEPFGYMGMV 274
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 255 bits (625), Expect = 9e-67
Identities = 131/252 (51%), Positives = 157/252 (62%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWL 82
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 431
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 432 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 611
VDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVL 202
Query: 612 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQER 791
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISH+++
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYA 262
Query: 792 GKKETXGCLGII 827
GKKE G +G++
Sbjct: 263 GKKEPFGYMGMV 274
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 255 bits (624), Expect = 1e-66
Identities = 133/220 (60%), Positives = 143/220 (65%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++GTS SL IR G PGSLIG QIYN VTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 746
+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 243 bits (594), Expect = 5e-63
Identities = 128/257 (49%), Positives = 154/257 (59%), Gaps = 2/257 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F G +G++GT S+ IR PG I G Q+YN +TAHA
Sbjct: 21 FIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGG 80
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +
Sbjct: 81 FGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITS 140
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 141 HSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL 200
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 776
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISHI
Sbjct: 201 SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHI 260
Query: 777 ISQERGKKETXGCLGII 827
+S G K G LG++
Sbjct: 261 VSTFSG-KPVFGYLGMV 276
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 235 bits (575), Expect = 1e-60
Identities = 126/251 (50%), Positives = 151/251 (60%), Gaps = 2/251 (0%)
Frame = +3
Query: 81 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 254
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 255 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 434
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 435 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 614
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 615 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 794
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++SHI+S G
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVSHIVSAFSG 263
Query: 795 KKETXGCLGII 827
K G LG++
Sbjct: 264 -KPVFGYLGMV 273
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 229 bits (561), Expect = 5e-59
Identities = 122/254 (48%), Positives = 152/254 (59%), Gaps = 2/254 (0%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 245
G SG++G S+ IR P + L+G QIYN +TAHA N
Sbjct: 29 GAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGN 88
Query: 246 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 425
LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS +H G
Sbjct: 89 WLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSG 148
Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 605
+VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 149 GAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVP 208
Query: 606 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQ 785
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGFG+ISHI+S
Sbjct: 209 VLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVS- 267
Query: 786 ERGKKETXGCLGII 827
+K G +G++
Sbjct: 268 TFSRKPVFGYIGMV 281
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 223 bits (545), Expect = 4e-57
Identities = 122/257 (47%), Positives = 149/257 (57%), Gaps = 2/257 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 776
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGFGIISH+
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGIISHV 258
Query: 777 ISQERGKKETXGCLGII 827
+S KK G + ++
Sbjct: 259 VS-TYSKKPVFGEISMV 274
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 221 bits (540), Expect = 2e-56
Identities = 120/214 (56%), Positives = 139/214 (64%)
Frame = -2
Query: 709 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 530
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 529 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 350
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 349 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTXX 170
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 169 L*I*AAPINEPGLPNXARMKRLKDVPMMPEXRPK 68
L I + PI PG PN AR+K L DVP MP PK
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPK 212
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 220 bits (537), Expect = 4e-56
Identities = 120/257 (46%), Positives = 148/257 (57%), Gaps = 2/257 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L L SG+ G++ S+ IR PGS L G +Q++N V HA
Sbjct: 19 FMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGG 78
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 139 HSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLL 198
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 776
+ IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGFGI+SHI
Sbjct: 199 SLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIVSHI 258
Query: 777 ISQERGKKETXGCLGII 827
+S KK G + ++
Sbjct: 259 VS-TYSKKPVFGEISMV 274
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 214 bits (522), Expect = 3e-54
Identities = 119/252 (47%), Positives = 140/252 (55%), Gaps = 1/252 (0%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
L +G+IGT+ S+ IR PG I Q+YN +TAHA N L
Sbjct: 24 LFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFL 83
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 431
+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS +H G S
Sbjct: 84 LPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPS 143
Query: 432 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 611
VDLAIF LHL+GISS +L LF AV ITA
Sbjct: 144 VDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVL 203
Query: 612 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQER 791
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS IS
Sbjct: 204 AGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIISTTIS-AN 262
Query: 792 GKKETXGCLGII 827
K G LG++
Sbjct: 263 SNKSVFGYLGMV 274
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 212 bits (517), Expect = 1e-53
Identities = 113/214 (52%), Positives = 127/214 (59%)
Frame = +3
Query: 69 LGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
LG+ SG+IGT+ SL IR G PGS IG Q+YN VTAHA N
Sbjct: 5 LGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNW 64
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G
Sbjct: 65 LVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGP 124
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 125 SVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPV 184
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 710
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 185 LAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 210 bits (512), Expect = 4e-53
Identities = 117/269 (43%), Positives = 144/269 (53%), Gaps = 1/269 (0%)
Frame = +3
Query: 24 FLLQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXX 200
FL K A L SG++GT+ S+ IR PG I Q+YN +T+H
Sbjct: 33 FLSSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIM 92
Query: 201 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 380
N L+P+++G PD+AFPR+NN+ + I+ENG GTG
Sbjct: 93 IFFMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTG 152
Query: 381 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 560
T+YPPLS +H VDL IF LHL+GISS +L LF
Sbjct: 153 WTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFG 212
Query: 561 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 740
AV ITA A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYI
Sbjct: 213 WAVVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYI 272
Query: 741 LILPGFGIISHIISQERGKKETXGCLGII 827
LI+PGFGIIS +IS K G LG++
Sbjct: 273 LIIPGFGIISTVIS-ANSNKNVFGYLGMV 300
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 202 bits (494), Expect = 6e-51
Identities = 109/223 (48%), Positives = 131/223 (58%), Gaps = 1/223 (0%)
Frame = +3
Query: 57 SLFFL-GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXX 233
SL+ + G SG IGT+ S+ IR +PGS++G +YN VTAHA
Sbjct: 18 SLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIG 77
Query: 234 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S
Sbjct: 78 GFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQ 137
Query: 414 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 593
AH G SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 138 AHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLL 197
Query: 594 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 722
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 198 LSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 202 bits (493), Expect = 8e-51
Identities = 110/256 (42%), Positives = 133/256 (51%), Gaps = 2/256 (0%)
Frame = +3
Query: 66 FLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXX 239
F G+ +G + S+ +R PG L G YN T H
Sbjct: 23 FFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGF 82
Query: 240 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 419
N VP+++GAPD++FPR+NN F E G GTG TVYPPLSS +H
Sbjct: 83 GNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSH 142
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 143 SGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVA 202
Query: 600 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++SHII
Sbjct: 203 IPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVSHII 262
Query: 780 SQERGKKETXGCLGII 827
+ KK G + +I
Sbjct: 263 A-TFSKKRVFGHVPMI 277
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 197 bits (480), Expect = 3e-49
Identities = 105/253 (41%), Positives = 143/253 (56%), Gaps = 2/253 (0%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 788
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+ Q
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV-QV 278
Query: 789 RGKKETXGCLGII 827
KK G +G+I
Sbjct: 279 YAKKPIFGKIGMI 291
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 197 bits (480), Expect = 3e-49
Identities = 105/253 (41%), Positives = 143/253 (56%), Gaps = 2/253 (0%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQE 788
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S I+ Q
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIV-QV 278
Query: 789 RGKKETXGCLGII 827
KK G +G+I
Sbjct: 279 YAKKPIFGKIGMI 291
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 192 bits (467), Expect = 1e-47
Identities = 110/256 (42%), Positives = 137/256 (53%), Gaps = 5/256 (1%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
L SG++GT+ S+ IR PG I Q+YN +TAHA N L
Sbjct: 52 LFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFL 111
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAH 419
+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPLS +H
Sbjct: 112 MPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSH 171
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
G SVDLAIF+LHL+G+SS +L LF +
Sbjct: 172 SGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSS 224
Query: 600 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS I
Sbjct: 225 RSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIISTTI 284
Query: 780 SQERGKKETXGCLGII 827
S K G +G++
Sbjct: 285 SSS-SNKPIFGYIGMV 299
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 186 bits (453), Expect = 6e-46
Identities = 102/212 (48%), Positives = 121/212 (57%), Gaps = 2/212 (0%)
Frame = +3
Query: 81 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 254
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 255 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 434
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 435 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 614
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 615 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF 710
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 184 bits (449), Expect = 2e-45
Identities = 104/231 (45%), Positives = 127/231 (54%), Gaps = 2/231 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 749
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 182 bits (444), Expect = 7e-45
Identities = 95/249 (38%), Positives = 135/249 (54%), Gaps = 2/249 (0%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGA--AQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPL 260
++ T+ +A G L G ++N +T H N +PL
Sbjct: 132 MLATANPAEAQALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPL 191
Query: 261 ILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDL 440
++GAPD+AFPR+NN+ + +++ GAG G T YPP+S+ R+VD
Sbjct: 192 MIGAPDMAFPRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDF 251
Query: 441 AIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGA 620
AIF++H++G SS + ++PLF +V +TA+ AGA
Sbjct: 252 AIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGA 311
Query: 621 ITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKK 800
IT+LLTDRN T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+ISHI++ KK
Sbjct: 312 ITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVISHIVA-TFSKK 370
Query: 801 ETXGCLGII 827
G L ++
Sbjct: 371 PIFGYLPMV 379
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 182 bits (444), Expect = 7e-45
Identities = 104/236 (44%), Positives = 130/236 (55%), Gaps = 4/236 (1%)
Frame = +3
Query: 129 GNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 308
G +L A ++N +TAH N VP+++GAPD+AFPR+NNI
Sbjct: 82 GPSATLDQAYHLWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNIS 141
Query: 309 FXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
F V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 142 FWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASS 200
Query: 477 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 656
+ ++PLFV +V +TAF A AIT+LLTDRN T
Sbjct: 201 ILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGT 260
Query: 657 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGI 824
+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGFGIIS I+S +K G LG+
Sbjct: 261 TFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGIISQIVS-TFSRKPVFGYLGM 315
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 175 bits (427), Expect = 8e-43
Identities = 99/222 (44%), Positives = 120/222 (54%), Gaps = 2/222 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L L SG+ GT+ SL IR PG L G Q++N V HA
Sbjct: 19 FLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGG 78
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S A
Sbjct: 79 FGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQA 138
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 139 HSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLL 198
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 722
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 199 TLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 171 bits (417), Expect = 1e-41
Identities = 95/200 (47%), Positives = 112/200 (56%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 12 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 71
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 431
+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G S
Sbjct: 72 IPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGAS 131
Query: 432 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 611
VDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 132 VDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVL 191
Query: 612 AGAITILLTDRNLNTSFFDP 671
A IT+LLTDRNLNT+FFDP
Sbjct: 192 AAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 171 bits (415), Expect = 2e-41
Identities = 90/254 (35%), Positives = 129/254 (50%), Gaps = 1/254 (0%)
Frame = +3
Query: 66 FLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 245
++GL SG+ G S S +R +PG + +Y+ +T HA N
Sbjct: 23 YMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGN 82
Query: 246 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 425
+PL++ D++ PR+NN+ + G G G T+YPPLS++ G
Sbjct: 83 WFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDG 142
Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXX 602
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 143 LPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSV 202
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+ISHI+
Sbjct: 203 PVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVISHILC 262
Query: 783 QERGKKETXGCLGI 824
+ K G +G+
Sbjct: 263 RSSAKLHVFGKIGM 276
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 166 bits (404), Expect = 5e-40
Identities = 96/231 (41%), Positives = 119/231 (51%), Gaps = 2/231 (0%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L S +IGT S IR N GS L G Q +N +TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 416
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQS 143
Query: 417 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 596
H G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 144 HSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLL 203
Query: 597 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 749
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 204 SLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 163 bits (395), Expect = 6e-39
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 4/229 (1%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 749
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 161 bits (391), Expect = 2e-38
Identities = 87/239 (36%), Positives = 118/239 (49%), Gaps = 2/239 (0%)
Frame = +3
Query: 69 LGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
LG +G+ G+ S+ IR +PG G+ Q+YN +T H
Sbjct: 31 LGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFG 90
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N ++PL+LGAP++AFPR+N + F + G G+ T YPPLS
Sbjct: 91 NWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQP 149
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 150 ELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSV 209
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGIIS +
Sbjct: 210 PVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIISEAV 268
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 161 bits (391), Expect = 2e-38
Identities = 90/248 (36%), Positives = 119/248 (47%), Gaps = 2/248 (0%)
Frame = +3
Query: 42 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXX 215
K+ + + SG +G SLFIR G L G Q YN +T+H
Sbjct: 14 KMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFI 73
Query: 216 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 395
N +P++ G PD+ FPR+NN+ F + E G G G T+YP
Sbjct: 74 MPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYP 133
Query: 396 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 575
L H + D +F++HL GISS SF LF+ A I
Sbjct: 134 TLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALI 193
Query: 576 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 755
TA AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP
Sbjct: 194 TAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPV 253
Query: 756 FGIISHII 779
FG+IS I+
Sbjct: 254 FGLISTIV 261
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 3e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 438 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 617
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 618 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 725
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 155 bits (377), Expect = 1e-36
Identities = 90/232 (38%), Positives = 124/232 (53%), Gaps = 2/232 (0%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 149 bits (362), Expect = 6e-35
Identities = 93/255 (36%), Positives = 117/255 (45%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
F GL G IG SL IR +P + + +YN VT H
Sbjct: 118 FVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFG 177
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +P+ L D+ PR+N++ G G G T+YPPLS
Sbjct: 178 NYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGS 234
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD +FSLHLAG+SS S + V A T+
Sbjct: 235 GFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSL 289
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+SHI
Sbjct: 290 PVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVSHICM 349
Query: 783 QERGKKETXGCLGII 827
+ G G+I
Sbjct: 350 SLSNNDSSFGYYGLI 364
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 140 bits (338), Expect = 5e-32
Identities = 82/250 (32%), Positives = 117/250 (46%), Gaps = 3/250 (1%)
Frame = +3
Query: 42 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLI---GAAQIYNXXVTAHAXXXXXXX 212
K+ S +L G+IG S+ IR G I +IYN T H
Sbjct: 18 KIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFN 77
Query: 213 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 392
N L P++LG D+ +PR+N +E G+GTG T+Y
Sbjct: 78 IMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLY 137
Query: 393 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 572
PPLS+++++ G +D IF L AGI+S D++ ++
Sbjct: 138 PPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIV 195
Query: 573 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 752
+T+F ++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILP
Sbjct: 196 LTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILP 255
Query: 753 GFGIISHIIS 782
GFGIIS ++S
Sbjct: 256 GFGIISLLLS 265
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 139 bits (336), Expect = 9e-32
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 1/208 (0%)
Frame = +3
Query: 162 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 341
+YN T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 342 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 518
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 519 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 698
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 699 QHLF*FFGHPEVYILILPGFGIISHIIS 782
QHLF FFGHPEVYILILP FG+ISH+IS
Sbjct: 238 QHLFWFFGHPEVYILILPAFGVISHVIS 265
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 135 bits (326), Expect = 1e-30
Identities = 84/239 (35%), Positives = 114/239 (47%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
F LG+ S ++G S SL R P L + +YN VT H
Sbjct: 17 FSLGIFSALLGMSFSLLFRLQLAFPSIL--TSDVYNAFVTLHGLVMVFFAAMPTAIGFFA 74
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N L+P PD+ FPR+N + F ++ + A G T YPPLSS
Sbjct: 75 NLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----L 125
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
SV+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 126 SPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSL 183
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S I
Sbjct: 184 PVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFSSSI 242
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 124 bits (300), Expect = 2e-27
Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Frame = +3
Query: 66 FLGLCSGIIGTSXSLFIRAXFGNPGSLI----GAAQIYNXXVTAHAXXXXXXXXXXXXXX 233
++G +GI+G S+ IR G I IYN +T H
Sbjct: 27 YMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIG 86
Query: 234 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSN 410
N L+P+++G +++ PR+N I F ++ +G T+YPPLS+
Sbjct: 87 FYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTR 146
Query: 411 IAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 587
A G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 147 DADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSIL 206
Query: 588 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+
Sbjct: 207 LIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLT 264
Query: 768 SHIIS 782
S I++
Sbjct: 265 SLILT 269
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 124 bits (299), Expect = 3e-27
Identities = 74/181 (40%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +3
Query: 81 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 254
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 255 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 434
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 435 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 614
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 615 G 617
G
Sbjct: 204 G 204
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 123 bits (296), Expect = 6e-27
Identities = 76/228 (33%), Positives = 103/228 (45%), Gaps = 6/228 (2%)
Frame = +3
Query: 117 RAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 296
R FG G +IG A Y T H N L+PL++GA D+AFPR+
Sbjct: 72 RLLFGESG-VIGPAT-YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRL 129
Query: 297 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 473
N F G AG G T Y PLS+N+ G L + ++ + G+S
Sbjct: 130 NMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVS 189
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S ++ +LPL + + +TA A +LL DR+
Sbjct: 190 STMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFG 249
Query: 654 TSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
T FF GGGDPIL+QHLF FGHPEVYI+ILP +GI+ ++S
Sbjct: 250 TEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGILGDVLS 297
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 121 bits (292), Expect = 2e-26
Identities = 73/230 (31%), Positives = 102/230 (44%)
Frame = +3
Query: 90 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 269
+G +L +R P + + +++N T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 270 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 449
A D+AFPR+N+ F + + G Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 450 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 629
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 630 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS +I
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMISEVI 277
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 121 bits (292), Expect = 2e-26
Identities = 86/251 (34%), Positives = 118/251 (47%), Gaps = 8/251 (3%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
GL + +G + +R +PG + + YN +T+H N L
Sbjct: 105 GLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYL 163
Query: 252 VPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----S 407
+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 164 IPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMG 223
Query: 408 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 587
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 224 NQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGL 281
Query: 588 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 767
AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GII
Sbjct: 282 ILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGII 339
Query: 768 SHIISQERGKK 800
S+I+ + G++
Sbjct: 340 SYILPRFSGRR 350
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 118 bits (285), Expect = 1e-25
Identities = 73/233 (31%), Positives = 106/233 (45%), Gaps = 1/233 (0%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++G +L IR PG I A YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
GA D+AFPR+N + ++ G TG T Y P S AH +V +
Sbjct: 118 GAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVL 173
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
F + G SS ++ ++PLFV A+ T+ G +
Sbjct: 174 FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLL 232
Query: 627 ILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
+L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S +++
Sbjct: 233 VLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMSEVVA 285
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 116 bits (279), Expect = 7e-25
Identities = 76/230 (33%), Positives = 100/230 (43%)
Frame = +3
Query: 90 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 269
IG S + +R P ++YN +T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 270 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 449
D+AFPR+N + F V G T YPPLS G +L I
Sbjct: 103 TEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWIL 159
Query: 450 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 629
SL L G SS +PLF A+ T+ A A+ +
Sbjct: 160 SLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALIL 219
Query: 630 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS +I
Sbjct: 220 LSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVISEVI 269
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 115 bits (277), Expect = 1e-24
Identities = 69/215 (32%), Positives = 97/215 (45%)
Frame = +3
Query: 135 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 314
PG + + YN +T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 315 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 494
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 495 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 674
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 675 GGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
GGDP++YQ++F F+ HP VY+ +LP FG S II
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEII 214
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 113 bits (273), Expect = 4e-24
Identities = 73/231 (31%), Positives = 98/231 (42%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
+IG +L +R G P + +YN T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
GA D+AFPR+N + V G Y PL+ VD I
Sbjct: 106 GARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWI 165
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ L G++S + +++PLFV + AF A
Sbjct: 166 VGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATI 225
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS ++
Sbjct: 226 QLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVL 276
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 111 bits (268), Expect = 2e-23
Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 2/233 (0%)
Frame = +3
Query: 108 LFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 287
L +R + + +YN +T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 288 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 461
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 462 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 641
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 642 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKK 800
RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S I+ + G+K
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVSLILPKFSGRK 319
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 111 bits (268), Expect = 2e-23
Identities = 81/262 (30%), Positives = 114/262 (43%), Gaps = 1/262 (0%)
Frame = +3
Query: 45 LXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXX 224
+ + S FFLG G++ +L IRA PG + + +N T H
Sbjct: 47 IMSFSFFFLG---GLM----ALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPI 99
Query: 225 XXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPL 401
N ++PL +GAPD+AFPR+N F + GA G T+Y PL
Sbjct: 100 VWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPL 158
Query: 402 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 581
S I G D+ I + GI S + ++P+F + + +
Sbjct: 159 SDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVS 218
Query: 582 FXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 761
A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FG
Sbjct: 219 VLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFG 277
Query: 762 IISHIISQERGKKETXGCLGII 827
I+S II +K G +G+I
Sbjct: 278 IVSEII-PVFSRKPMFGYVGLI 298
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 111 bits (266), Expect = 3e-23
Identities = 69/231 (29%), Positives = 99/231 (42%)
Frame = +3
Query: 90 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 269
+G +L +R P + YN T H LVPL++G
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDRYNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVG 104
Query: 270 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 449
IAFPR+N + V+ G G Y PLS G+ D+
Sbjct: 105 TRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQ 164
Query: 450 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 629
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 165 MITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTS 224
Query: 630 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S I++
Sbjct: 225 LILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVSSIVA 275
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 111 bits (266), Expect = 3e-23
Identities = 67/230 (29%), Positives = 99/230 (43%)
Frame = +3
Query: 90 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 269
+G +L IR PG I A YN T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 270 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 449
A D+AFP++N + F +V+ GA TG T Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 450 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 629
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 630 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+ + FDPA GGDP+L+QH F F+ HP VYI++LP +IS ++
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVISEVV 277
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 111 bits (266), Expect = 3e-23
Identities = 69/250 (27%), Positives = 109/250 (43%)
Frame = +3
Query: 30 LQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXX 209
+ I+ L A FFL +G ++FIR P + +AQ YN +T H
Sbjct: 27 IAILYLVAGGFFFL------VGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 210 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
N +VPL +GA D++FP +N + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 390 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 569
Y LS + +G +D + L ++G+ + ++ +LPLF
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197
Query: 570 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 749
+ + + +++ DR T+FF+P GG+ ++++HLF FGHPEVYILIL
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILIL 257
Query: 750 PGFGIISHII 779
P FGI S +I
Sbjct: 258 PAFGIFSEVI 267
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 109 bits (262), Expect = 8e-23
Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 3/233 (1%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++G ++ +R P + + +YN T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVD 437
GAPD+AFP++N F G A +G YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 438 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 617
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 618 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 776
+LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S +
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSEL 283
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 109 bits (261), Expect = 1e-22
Identities = 73/239 (30%), Positives = 103/239 (43%), Gaps = 2/239 (0%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
+I S +L R P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA 443
GA D+AFPR+N + + E+GA G T+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 444 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 623
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 624 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 797
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++ +IS GK
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMADVISTFSGK 272
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 105 bits (253), Expect = 1e-21
Identities = 66/200 (33%), Positives = 94/200 (47%), Gaps = 6/200 (3%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 419
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 600 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 764
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 765 ISHIISQERGKKETXGCLGI 824
+S +I Q ++ G I
Sbjct: 264 VSEVI-QRMARRRAYGYTAI 282
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 103 bits (247), Expect = 5e-21
Identities = 63/227 (27%), Positives = 95/227 (41%), Gaps = 1/227 (0%)
Frame = +3
Query: 105 SLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 284
SL IR P + + YN +T H N +VPL+LGA D+A
Sbjct: 46 SLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVA 105
Query: 285 FPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 461
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 106 LPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILL 162
Query: 462 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 641
G SS S ++P++V +V + A ++L +
Sbjct: 163 LGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLE 222
Query: 642 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++ + S
Sbjct: 223 RKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVAS 269
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 102 bits (244), Expect = 1e-20
Identities = 80/254 (31%), Positives = 107/254 (42%), Gaps = 16/254 (6%)
Frame = +3
Query: 84 GIIGTSXSLFIRAXFGNPG--SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVP 257
G++ S +R G PG S I A Q Y +T H N L+P
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIP 111
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGR 428
L++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 112 LMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDW 171
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXX 605
+ L + SL L I + +LPL V + T
Sbjct: 172 GIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPA 231
Query: 606 XXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPG 755
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP
Sbjct: 232 LFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPA 290
Query: 756 FGIISHIISQERGK 797
FGI+S +IS K
Sbjct: 291 FGIVSDLISTHARK 304
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 101 bits (243), Expect = 2e-20
Identities = 67/230 (29%), Positives = 93/230 (40%)
Frame = +3
Query: 93 GTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 272
G L +RA P + + YN T H N +VPL +GA
Sbjct: 71 GGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGA 129
Query: 273 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 452
D+AFP +NN+ F ++ G T Y PL+SN G + +
Sbjct: 130 RDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLG 189
Query: 453 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 632
L +AGI + + ++P+F IT A+ +L
Sbjct: 190 LQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALL 249
Query: 633 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
DR FF GG P+L+ +LF +GHPEVYI+ILP FGI S IIS
Sbjct: 250 SFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIIS 299
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 101 bits (241), Expect = 3e-20
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 15/225 (6%)
Frame = +3
Query: 153 AAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 332
A + Y VT HA N L+PL++GA D+AFP +N + +
Sbjct: 84 APEFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAF 143
Query: 333 XXXXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 500
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 144 FFFGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYM 203
Query: 501 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 671
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 204 TTIIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGL 263
Query: 672 --------AGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
AGGG P+L+QHLF F+ HP VYI+ILP G++S I++
Sbjct: 264 VVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVSDILA 308
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 99.1 bits (236), Expect = 1e-19
Identities = 59/186 (31%), Positives = 85/186 (45%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S ++S
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304
Query: 783 QERGKK 800
GK+
Sbjct: 305 TFAGKR 310
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 99.1 bits (236), Expect = 1e-19
Identities = 43/61 (70%), Positives = 51/61 (83%)
Frame = +3
Query: 645 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGI 824
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+ GK+E G LG+
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIAHYSGKREPFGYLGM 250
Query: 825 I 827
+
Sbjct: 251 V 251
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 98.3 bits (234), Expect = 2e-19
Identities = 58/138 (42%), Positives = 70/138 (50%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
F G+ SG++GTS SL IR G PGSL+ Q+YN VTAH
Sbjct: 4 FIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFG 63
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 64 NWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISA 121
Query: 423 GRSVDLAIFSLHLAGISS 476
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 95.9 bits (228), Expect = 1e-18
Identities = 53/111 (47%), Positives = 64/111 (57%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 251
G +G+IGT+ SL IRA G PG+L+G Q N VTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWL 83
Query: 252 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 404
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 95.9 bits (228), Expect = 1e-18
Identities = 63/231 (27%), Positives = 92/231 (39%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++G ++ IRA P S + YN T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
G+ D+AFPR+ F + +G +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 95.5 bits (227), Expect = 1e-18
Identities = 58/186 (31%), Positives = 82/186 (44%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S + S
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303
Query: 783 QERGKK 800
GK+
Sbjct: 304 TFAGKR 309
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 95.1 bits (226), Expect = 2e-18
Identities = 62/237 (26%), Positives = 98/237 (41%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
+I +L +R P + +++ YN T H L+PL++
Sbjct: 71 LIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMI 129
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
GA D+ FPR+ + + + G +Y PLS++ G S D +
Sbjct: 130 GARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWL 189
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ LA I+S S ++P+ + + TAF
Sbjct: 190 IGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSI 249
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 797
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++ ++ GK
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVATMLPTFVGK 306
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 94.3 bits (224), Expect = 3e-18
Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 4/235 (1%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++G + +R PG + A+ +N T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSV 434
GA D+AFPR+N + ++ G G Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 435 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 614
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 615 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS +I
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIISEVI 278
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 93.5 bits (222), Expect = 6e-18
Identities = 63/231 (27%), Positives = 93/231 (40%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
I+G +L +R P + + YN + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
G D+ FPR+N + ++ G YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S II
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVSSII 280
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 93.5 bits (222), Expect = 6e-18
Identities = 82/282 (29%), Positives = 114/282 (40%), Gaps = 30/282 (10%)
Frame = +3
Query: 42 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNP-----------GSLIGAA-----QIYNX 173
K+ A F G+ +IG SL R G P G I A + Y
Sbjct: 45 KVIAKQFLFTGIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGKLEPEFYLA 104
Query: 174 XVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 353
VT H N L+PL +GA D+A +N + +
Sbjct: 105 LVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASI 164
Query: 354 IVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 521
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 165 FLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITTVINLR 224
Query: 522 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG---- 677
SF +LPL + A ITA A +L+ DR+L TSFF AG
Sbjct: 225 VKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALH 284
Query: 678 --GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 797
GG P+L+QHLF F GHPEVYI+++P GI S +I+ K
Sbjct: 285 HQGGSPVLFQHLFWFLGHPEVYIVLIPALGITSEVIATNARK 326
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 93.5 bits (222), Expect = 6e-18
Identities = 62/228 (27%), Positives = 92/228 (40%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
++G +L +R P + + Y+ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
G+ D+AFPR+ + + G Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 770
+L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 93.5 bits (222), Expect = 6e-18
Identities = 71/208 (34%), Positives = 83/208 (39%)
Frame = +3
Query: 93 GTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 272
G L R G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 273 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 452
P +A PR+ N+ F + G G VYPP SS +AH +VDL IF
Sbjct: 80 PXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFX 139
Query: 453 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 632
LHLAGISS ++ LF A AIT+L
Sbjct: 140 LHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITML 199
Query: 633 LTDRNLNTSFFDPAGGGDPILYQHLF*F 716
R N SFF P G P + F F
Sbjct: 200 XXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 93.1 bits (221), Expect = 8e-18
Identities = 62/231 (26%), Positives = 94/231 (40%)
Frame = +3
Query: 87 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
+IG ++ IRA +P S A+ Y T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
G+ D+A+PR++ F + +G +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 91.1 bits (216), Expect = 3e-17
Identities = 74/255 (29%), Positives = 108/255 (42%), Gaps = 3/255 (1%)
Frame = +3
Query: 69 LGLCSGIIGTSXSLFIR--AXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 242
LG+ + IIG+ + IR F N + A Y+ VT H
Sbjct: 26 LGIVALIIGSVNAALIRDQLSFNN----LNAVDYYDA-VTLHGIFMIFFVVMPLSTGFA- 79
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 419
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 420 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 599
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIA 196
Query: 600 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S ++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVSELL 256
Query: 780 SQERGKKETXGCLGI 824
+ ++E G I
Sbjct: 257 -PKMARREIFGYTAI 270
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 90.6 bits (215), Expect = 4e-17
Identities = 67/231 (29%), Positives = 100/231 (43%), Gaps = 1/231 (0%)
Frame = +3
Query: 90 IGTSXSLFIRAXFGNPGS-LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 266
+G + +L IRA PG+ I + +N T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 267 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 446
D+A+P++N I F + T PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWI 149
Query: 447 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 626
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 627 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++ ++
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMV 260
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 90.2 bits (214), Expect = 5e-17
Identities = 67/254 (26%), Positives = 102/254 (40%)
Frame = +3
Query: 18 NAFLLQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXX 197
N ++ I+ + A LFF+ +GI+G L +R P + + YN T H
Sbjct: 38 NNQVIGILYVGAAFLFFI--LAGILG----LIMRTQLAVPENDLVGQDFYNQIFTVHGTT 91
Query: 198 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 377
L+P +L A D+ FPR++ +
Sbjct: 92 MMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKG 150
Query: 378 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 557
G +YPPL+ G + D + + IS+ S ++P+F
Sbjct: 151 GWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIF 210
Query: 558 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 737
A+ I A A +L +R+ FF GGDP+L+QHLF FFGHPEVY
Sbjct: 211 AWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVY 270
Query: 738 ILILPGFGIISHII 779
I+ LP G++S I+
Sbjct: 271 IIFLPAAGLVSMIV 284
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 89.8 bits (213), Expect = 7e-17
Identities = 59/185 (31%), Positives = 79/185 (42%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S I S
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYSEIFS 323
Query: 783 QERGK 797
GK
Sbjct: 324 TFSGK 328
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 88.6 bits (210), Expect = 2e-16
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 3/244 (1%)
Frame = +3
Query: 60 LFFLG-LCSGIIGTSXSLFIRAXFGNPGSLI-GAAQIYNXXVTAHAXXXXXXXXXXXXXX 233
L+ +G + + + ++ IR G I +YN + H
Sbjct: 20 LYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTG 79
Query: 234 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
N +PL++GA D+AFPR+N + + + T YPP S I
Sbjct: 80 FFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-I 138
Query: 414 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 593
H + FS+ L G +S +++L +FV A + AF
Sbjct: 139 THGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQ 195
Query: 594 XXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 770
G A+T+L D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++
Sbjct: 196 LIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMVF 255
Query: 771 HIIS 782
I++
Sbjct: 256 EIVA 259
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 87.0 bits (206), Expect = 5e-16
Identities = 67/233 (28%), Positives = 96/233 (41%), Gaps = 16/233 (6%)
Frame = +3
Query: 129 GNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 308
G PG ++ + Y +T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 309 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 473
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 474 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 653
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 654 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI+SHI+
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 87.0 bits (206), Expect = 5e-16
Identities = 54/180 (30%), Positives = 80/180 (44%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI S IIS
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFSEIIS 298
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 85.0 bits (201), Expect = 2e-15
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Frame = +3
Query: 378 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 548
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 549 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 728
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 729 EVYILILPGFGIISHIISQERGKK 800
EVY+LI+P FG I+ I+ ++
Sbjct: 403 EVYVLIIPTFGFINMIVPHNNTRR 426
Score = 40.7 bits (91), Expect = 0.044
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +3
Query: 42 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXX 215
K A + + + +G+ G + + IR +P S G + Y VTAH
Sbjct: 61 KRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVV 120
Query: 216 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 311
N L+P +G+ D+A+PR+N+I F
Sbjct: 121 VPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 84.2 bits (199), Expect = 4e-15
Identities = 51/177 (28%), Positives = 78/177 (44%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVSMIV 343
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 81.0 bits (191), Expect = 3e-14
Identities = 59/238 (24%), Positives = 87/238 (36%)
Frame = +3
Query: 69 LGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 248
LG C +G +L IR P + YN +T HA N
Sbjct: 45 LGFC---LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNY 101
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
+PL LG D+A PR+N G T Y PL+ + G
Sbjct: 102 FLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGV 161
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
SV + L+ G+ S ++P+F ++ T+
Sbjct: 162 SVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGG 219
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
A + + L S F+P GG P+LYQ F F+ HP VY+++LP GI + + S
Sbjct: 220 LTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGIGAEVAS 277
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 258 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 437
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 438 LAIFS 452
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 5e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 557 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 724
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 80.6 bits (190), Expect = 4e-14
Identities = 56/235 (23%), Positives = 94/235 (40%)
Frame = +3
Query: 75 LCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 254
LC+G++ ++ +R PG+ +A +N T H L+
Sbjct: 73 LCAGVL----AVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LL 127
Query: 255 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 434
P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 128 PALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGS 185
Query: 435 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 614
D+ + L ++S + +PL+ V +
Sbjct: 186 DIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLI 245
Query: 615 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP + + I+
Sbjct: 246 AGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIV 300
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 80.2 bits (189), Expect = 6e-14
Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 14/222 (6%)
Frame = +3
Query: 159 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 338
+ Y T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 339 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 509
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 510 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 677
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 678 -------GGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
GG P+L+QHLF F+ HP VYI++LP G++S ++S
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLS 311
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 77.4 bits (182), Expect = 4e-13
Identities = 50/179 (27%), Positives = 76/179 (42%)
Frame = +3
Query: 243 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 422
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 603 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS II
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII 321
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 76.2 bits (179), Expect = 9e-13
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 1/179 (0%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 425
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 605
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 606 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 782
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G + +S
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDYLS 288
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 74.1 bits (174), Expect = 4e-12
Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Frame = +3
Query: 81 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 254
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 255 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
P+++GAPD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 73.7 bits (173), Expect = 5e-12
Identities = 33/45 (73%), Positives = 34/45 (75%)
Frame = +2
Query: 644 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 778
K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSYY
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYY 51
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 73.3 bits (172), Expect = 7e-12
Identities = 61/261 (23%), Positives = 99/261 (37%), Gaps = 13/261 (4%)
Frame = +3
Query: 57 SLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
+LFFL + G +L R + G+ + + YN V+ H
Sbjct: 33 ALFFL-----VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGF 87
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN-- 410
N LVPL +GA D+AFPR+N + + G T+Y PL++
Sbjct: 88 A-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAY 146
Query: 411 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 590
I G + +L + + +P+F ++ +T +
Sbjct: 147 IPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMM 206
Query: 591 XXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVY 737
A+ IL +D L T++F D G +L+ HLF FFGHPEVY
Sbjct: 207 LFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVY 266
Query: 738 ILILPGFGIISHIISQERGKK 800
I+ P G+++ G++
Sbjct: 267 IVFFPALGVMAECFQTFTGRR 287
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = +3
Query: 72 GLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 245
G +G++GT S+ IR PG+ I G Q+YN +TAHA N
Sbjct: 25 GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGN 84
Query: 246 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 85 WFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 396 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 575
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 576 TAFXXXXXXXXXAGAITILLTDR 644
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 230 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 355
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 72.1 bits (169), Expect = 2e-11
Identities = 46/119 (38%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F L S +IGT S IR N GS L G Q +N +TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 413
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 64.1 bits (149), Expect = 4e-09
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 236
F + G+ GT+ S+ IR PG+ L G Q++N V HA
Sbjct: 19 FIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 237 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 389
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 79 FGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 62.9 bits (146), Expect = 9e-09
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 714 FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGII 827
FFGHPEVYILILPGFG+ISHI++ GKKE G +G++
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMV 39
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 354 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 476
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 540 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 719
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 720 GHPEVYILIL 749
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 58.4 bits (135), Expect = 2e-07
Identities = 27/33 (81%), Positives = 29/33 (87%)
Frame = +3
Query: 729 EVYILILPGFGIISHIISQERGKKETXGCLGII 827
EVYILILPGFG+ISHIISQE GKKE G LG+I
Sbjct: 155 EVYILILPGFGMISHIISQESGKKEAFGTLGMI 187
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 49.2 bits (112), Expect = 1e-04
Identities = 41/177 (23%), Positives = 65/177 (36%)
Frame = +3
Query: 249 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 428
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 429 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 608
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 609 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I I+
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL 351
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 560 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 712
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 47.2 bits (107), Expect = 5e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3
Query: 714 FFGHPEVYILILPGFGIISHIISQERGKKETXGCLGII 827
FFGHPEVY+LILP FGI+SHI G G++
Sbjct: 1 FFGHPEVYVLILPVFGIVSHICMTFTNNDSLFGYYGLV 38
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 5e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 236 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 415
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 416 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 595
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 596 XTTCFSWSYYNIINRSKLKY 655
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 43.6 bits (98), Expect = 0.006
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 701 TFILIFWTS*SLYFNFTRIWYNFSYY 778
+ ++IFW+S SLYFN IWYNF YY
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYY 27
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 41.9 bits (94), Expect = 0.019
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHA 191
F + SG+IG+S S+ IR GS++ + QIYN VT+HA
Sbjct: 4 FIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 40.3 bits (90), Expect = 0.058
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 423 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 602
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 603 XXXAGAITILLTDRNLNT 656
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 37.9 bits (84), Expect = 0.31
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHA 191
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 35.5 bits (78), Expect = 1.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 678 GGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERG 794
G DP+L + LF F GHP VY +LP + + + Q+ G
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAYISWYNFVPQQAG 262
>UniRef50_Q2Y5N3 Cluster: Integral membrane proteins containing
uncharacterized repeats-like precursor; n=3;
Nitrosospira multiformis ATCC 25196|Rep: Integral
membrane proteins containing uncharacterized
repeats-like precursor - Nitrosospira multiformis
(strain ATCC 25196 / NCIMB 11849)
Length = 433
Score = 34.7 bits (76), Expect = 2.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 726 PEVYILILPGFGIISHIISQERGKK 800
PE+Y LILPG G++ I Q++ KK
Sbjct: 407 PEIYALILPGLGLVGFIARQKKAKK 431
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 34.7 bits (76), Expect = 2.9
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 684 DPILYQHLF*FFGHPEVYILILPGFGIISHI---ISQERGK 797
+P+L + LF FFGHP VY +LP + + I I E+GK
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAYVALYTILPKIVSEKGK 249
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.9 bits (74), Expect = 5.0
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 572 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 751
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 752 RI 757
I
Sbjct: 154 SI 155
>UniRef50_P98004 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Cytochrome aa3 subunit
1) (Oxidase aa(3) subunit 1); n=5; Sulfolobaceae|Rep:
Quinol oxidase subunit 1 (EC 1.10.3.-) (Quinol oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Oxidase aa(3)
subunit 1) - Sulfolobus acidocaldarius
Length = 517
Score = 33.9 bits (74), Expect = 5.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 690 ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGK 797
+L+ LF F+GHP VY + P FG + + I Q G+
Sbjct: 224 LLWAILFWFYGHPVVYYVPFPLFGALYYYIPQYAGR 259
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 33.5 bits (73), Expect = 6.6
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTA 185
F L + SG+ GT+ SL IR PGS L G +Q++N T+
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 33.1 bits (72), Expect = 8.7
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 63 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXV 179
F L + SG+ GT+ SL IR PGS L G +Q++N V
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 608,421,643
Number of Sequences: 1657284
Number of extensions: 10837463
Number of successful extensions: 23746
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 21973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23471
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -