Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K14
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   207   1e-54
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   9.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  207 bits (506), Expect = 1e-54
 Identities = 109/238 (45%), Positives = 133/238 (55%), Gaps = 2/238 (0%)
 Frame = +3

Query: 72  GLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 245
           GL SGIIG+  S  IR     PGS  L G  Q+YN  ++AH                  N
Sbjct: 28  GLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGN 87

Query: 246 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 425
            LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H G
Sbjct: 88  YLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSG 147

Query: 426 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 605
            ++DLAI SL L GISS                   S  Q+PLF  A+ IT+        
Sbjct: 148 PAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLP 207

Query: 606 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 779
             AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII
Sbjct: 208 VLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 165 KFEQLQLMSLDCRXQRE*KG 106
           K  QL+L SLD R Q+E KG
Sbjct: 111 KLGQLELTSLDLRWQKEGKG 130


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 314 TPTPLPYIINFKKNCRKWCRNRMNS 388
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,496,481
Number of Sequences: 5004
Number of extensions: 43233
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)