Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K11
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   104   5e-24
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   103   1e-23
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    28   0.69 
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   2.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    24   8.5  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    24   8.5  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  104 bits (250), Expect = 5e-24
 Identities = 46/81 (56%), Positives = 52/81 (64%)
 Frame = +1

Query: 49  GPSSFGKRRNXPHTLCRSCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXX 228
           G  SFG R N  HT+CR CG  S+HIQKS CA CGYPAAK RSY+W  KA          
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGR 63

Query: 229 MRHLKIVRRRFRNGFKEGKPT 291
           M +LK V R F+NGF+ GKPT
Sbjct: 64  MSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  103 bits (247), Expect = 1e-23
 Identities = 47/88 (53%), Positives = 53/88 (60%)
 Frame = +1

Query: 49  GPSSFGKRRNXPHTLCRSCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXX 228
           G  SFG R N  HT+CR CG  S+HIQKS CA CGYPAAK RSY+W  KA          
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGR 63

Query: 229 MRHLKIVRRRFRNGFKEGKPTPPKKAVA 312
           M +LK V R F+NGF+ GKP     A A
Sbjct: 64  MSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
 Frame = +1

Query: 73  RNXPHTLCRSCGXSSYHIQ-----KSKCAQCG 153
           ++ PH LC +CG    HI        KC  CG
Sbjct: 100 KDCPHVLCTTCGAIDDHISVRCPWTKKCMNCG 131


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 248 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 135
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 76  NXPHTLCRSCGXSSYHIQKSKCAQCGYP 159
           N  H  C +C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 87  YVMQKLW*XVISHSKIKMR-PMWISCSKITILPLVSEG*AQEDYWN 221
           Y+M++L   +IS +  ++  P W S +  TI P+V +   +  YWN
Sbjct: 278 YLMEQLLRPLISRATFEVNIPAW-SRTIETIYPVVLKMCTKTKYWN 322


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 82  PHTLCRSCGXSSYHIQKSKCAQCGYP 159
           P TL R C   ++   + +C  CG P
Sbjct: 39  PTTLVRICDECAFGSSQDRCIICGAP 64


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 348 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 253
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,005
Number of Sequences: 5004
Number of extensions: 21866
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)