Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_K09
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 30 0.41
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 30 0.41
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.2
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 28 1.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 2.9
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 5.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.0
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 25 8.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.8
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/65 (23%), Positives = 32/65 (49%)
Frame = +1
Query: 301 YGIDDTPPWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIFVTGL 480
+ ++ P L + + QH L M+G + + P I+ A T + ++S + +G+
Sbjct: 58 FSLNAKVPVLLALLLGFQHALAMVGGVTSPPRII--AASANLTTEQTNYLVSAGLISSGI 115
Query: 481 ITWLQ 495
+T +Q
Sbjct: 116 MTLIQ 120
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -1
Query: 739 STATRSHQSTLKTIGIKPQLRWHRTVHTSYSSTPAAVLRYSWRPRSPHQDTSRPADS 569
++A S + G K L+ H + + STP+++ SW R + TS P S
Sbjct: 491 TSAPYQESSAIWRRGAKQSLQLHGGIVHATVSTPSSIKSLSWHRRGDYLATSSPTSS 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 314 SSIPYVTLPLRASSGFCSPRTSLTHTPLTASS 219
+S+PY + P+ +S+ S T +T TP+T ++
Sbjct: 500 TSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -3
Query: 314 SSIPYVTLPLRASSGFCSPRTSLTHTPLTASS 219
+S+PY + P+ +S+ S T +T TP+T ++
Sbjct: 559 TSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 369 DWGHCRDPVHPLPGSLHGGNRSRPIQYYIYYDICHRFNNL 488
+WG PV PL GN S P+QY Y+D+ N L
Sbjct: 17 NWG---SPVKPLNYKTAIGNSSIPLQYRNYWDVFQANNVL 53
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.9
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = -1
Query: 754 TGSRTSTATRSHQSTLKTIGIKPQLRWHRTVHTSYSSTPAAVLRYSWR-PRSPHQDTSRP 578
TG+ TST T + ST T + P+ TVH SS + L ++ + D+
Sbjct: 337 TGTSTSTTTAATSSTTVTGTVIPK---SSTVHEPPSSNDSHPLLQLFKDSKISDDDSPSN 393
Query: 577 ADSVSRASAPGMI-WCRLELLAVDS 506
A+ S + G + + ++EL ++DS
Sbjct: 394 AEGASTEDSKGEVSYSQIELPSLDS 418
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 647 VHTCRRSSVLMATKISSSGHFQAGRFSIAS 558
+HT + ++L++T + S HF A F + S
Sbjct: 102 IHTHSQEAILLSTLFADSDHFSATGFEVLS 131
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 471 DKYHSRYNIGSVWICFLHAESRAEDERDRDNGPNHR 364
D+Y R N + + + E++ EDE+D N P++R
Sbjct: 535 DEYRRRRNRTAQRVVEIPNETQTEDEQDGTNTPDNR 570
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 361 LTMIGAIVAIPFILCPALCMEETDPDRSNIISTMIF--VTGLITWLQATFGCRLPIVQGG 534
LT +G I+ P + LC+ R +++ F +TG++ WL +T+ IV
Sbjct: 425 LTFLG-IILTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGVVCWLASTYSFCDGIVNKD 483
Query: 535 TI 540
T+
Sbjct: 484 TV 485
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +1
Query: 322 PWYLCIFMALQHYLTMIGAIVAIPFILCPALCMEETDPDRSN 447
PW+L F + Y ++ +P + P ++ PD N
Sbjct: 442 PWHLGKFSKINGYAACAFVLLMVPILCFPQFRGKDNTPDAMN 483
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 245 THTPLTASSPIWITLLCTMALTLRPSEVSL 156
TH + +S P W T T+ ++ P +SL
Sbjct: 2223 THAKILSSHPEWDTKAVTLTVSYIPGSISL 2252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,807
Number of Sequences: 5004
Number of extensions: 67217
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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