Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_K02
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)               30   2.1  
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)               30   2.1  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   4.9  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 29   6.5  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   8.5  

>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1669

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +2

Query: 278  SSIRWSVLPCSSLAVPLLLTDSNIMVRARSKTRTWLRPRWPXXXXXXXXXXXXXRNEEAK 457
            S +R  VL C S+ V  LL+ S ++V +     +W R   P             RN++ +
Sbjct: 972  SPLRVLVLSCFSVVVAFLLSPSRVLVLSCFSQASWTRRPSPRGRLHSPIQARPNRNDQER 1031

Query: 458  LRTQNRAAQSE 490
            +    R  Q +
Sbjct: 1032 IYRHARVCQGD 1042


>SB_28483| Best HMM Match : Filament (HMM E-Value=0.0082)
          Length = 478

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 219 YDEVPDKGTGDEHADIRIYIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 46
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 49  YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 106


>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
          Length = 834

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 219 YDEVPDKGTGDEHADIRIYIVTVVVESHARTRKCQLQKLDDRQPADGHDSLLNLNFII 46
           YD   +  T   H+ +   I+T V ES  R+ + Q++  DD+   D HD L  L+ ++
Sbjct: 609 YDADLESSTRSWHSPLAPDILTGVKESRRRSVEVQVEIDDDQALQDMHDKLEKLDHML 666


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 241 YIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKSEI 366
           Y     S  +I    + VGV ++   G  ++D  QHY K+E+
Sbjct: 519 YARSVTSTLKISSAETHVGVTVYATQGKNVVDLKQHYNKTEL 560


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 173 ISACSSPVPLSGTSSYSLVRPRAT*CRLLHTNGSTSSIRWSV-LPCSSLAVPLLLTDSNI 349
           +SAC +  PL G SSY     + T C +  T  ST S  +SV L C+ + +P ++  S I
Sbjct: 172 VSACVAIGPLVGWSSYVESSHQLT-CHMDWTRKSTPSFAYSVNLICALIYLPGIICIS-I 229

Query: 350 MVRARSKTRT 379
               R +  T
Sbjct: 230 FAYTRRRINT 239


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
 Frame = +1

Query: 196 TFVGYLIIFAGAAAGYIMQTPSHKRIDIFYSLVGVALFVASGAIIIDRFQHYGKS---EI 366
           TF  +L+   G       +TP  +   IFY+LVG+ L + +   + + + HY K     I
Sbjct: 109 TFATHLLTTIGYG-NLTPKTPGGQLFTIFYALVGIPLTLLTLKSMGNHYNHYIKKLIILI 167

Query: 367 KDKNLAKASLAIINGAILLVD 429
           + + L +  +  + G + L D
Sbjct: 168 ETRCLKRTEVKGLEGKVCLGD 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,051,031
Number of Sequences: 59808
Number of extensions: 536811
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)