Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J24
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0725 - 23894215-23894412,23894660-23894803,23895058-238951...    28   4.8  
01_05_0111 - 18230195-18230239,18230541-18230615,18231379-182315...    28   4.8  
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609...    27   6.3  

>06_03_0725 -
           23894215-23894412,23894660-23894803,23895058-23895126,
           23895197-23895267,23895357-23895444,23895522-23895707,
           23895805-23895903,23896002-23896082,23896575-23896634,
           23896656-23896779,23897026-23897120,23897205-23897331,
           23897559-23897662,23897883-23897945
          Length = 502

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/66 (21%), Positives = 33/66 (50%)
 Frame = +1

Query: 208 VWTRSL*TIKPIIYGIGYLSLCSYVLDLFIAVMNVVFSCICDLMNVVYLNFVYYLNRYIL 387
           +W RS+  +  ++YG    S+   VLD   +  + ++  + +L++V  +    + N  + 
Sbjct: 120 LWGRSMGAVTSLLYGAEDPSIAGLVLD---SAFSNLYDLMMELVDVYKIRVPKFTNSLVH 176

Query: 388 TFFSLN 405
            ++ LN
Sbjct: 177 CYYELN 182


>01_05_0111 -
           18230195-18230239,18230541-18230615,18231379-18231566,
           18232416-18232739,18232926-18233115
          Length = 273

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 145 SLLKYSKVTVFFVVDSFPYKAVWT 216
           SL  + K  V   VDS PYK++WT
Sbjct: 215 SLTTHEKEEVVESVDSSPYKSIWT 238


>01_03_0050 +
           11959421-11959736,11959892-11959960,11960641-11960979,
           11961090-11961152,11962472-11962962,11963773-11964441
          Length = 648

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 202 CTERNQQRKRQSLLNTSTN*VKHKLLHNYIFTRIKG 95
           C ER ++R+ +  +NTS    KH++L  +   + KG
Sbjct: 212 CMERRKRRRLEETVNTSLYIKKHEILSYFFDKQNKG 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,634,994
Number of Sequences: 37544
Number of extensions: 159435
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)