Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J24
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   7.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.1  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.1  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.4  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 246 DYWLYRLERSCPNSLVRKGINNEKD 172
           DY+L+R   S  NSL  K  NN+ D
Sbjct: 280 DYFLFR---SLQNSLNGKNFNNDDD 301


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 88  NIIECINIPKINKDIKTIFKYTGEVH 11
           NII+   I  +   +  I  YTG+VH
Sbjct: 87  NIIDICWITMVYSLLGIIIAYTGDVH 112


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -2

Query: 373 LNNIQNLNTQHSLNHKYN*KQHSLQQ*INLIHKNIN 266
           ++++ N    ++ N+KYN   ++       ++ NIN
Sbjct: 82  ISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -2

Query: 373 LNNIQNLNTQHSLNHKYN*KQHSLQQ*INLIHKNIN 266
           ++++ N    ++ N+KYN   ++       ++ NIN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -2

Query: 373 LNNIQNLNTQHSLNHKYN*KQHSLQQ*INLIHKNIN 266
           ++++ N    ++ N+KYN   ++       ++ NIN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = -2

Query: 373 LNNIQNLNTQHSLNHKYN*KQHSLQQ*INLIHKNIN 266
           ++++ N    ++ N+KYN   ++       ++ NIN
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1   LGYYALHQYI 30
           LGYY  H YI
Sbjct: 244 LGYYLFHTYI 253


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/50 (24%), Positives = 20/50 (40%)
 Frame = -2

Query: 199 TERNQQRKRQSLLNTSTN*VKHKLLHNYIFTRIKGNNNIIECINIPKINK 50
           T + + R R     +    +   L +NY ++    NN    C NI  I +
Sbjct: 62  TSKERSRDRTERERSKEPKIISSLSNNYNYSNYNNNNYKQLCYNINHIEQ 111


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 425 PPIGDLKFRE 396
           PPIG L+FR+
Sbjct: 70  PPIGPLRFRK 79


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 425 PPIGDLKFRE 396
           PPIG L+FR+
Sbjct: 70  PPIGPLRFRK 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,085
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)