Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J23
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 256 3e-69
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 51 2e-07
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.42
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 3.9
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.9
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 5.2
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po... 26 5.2
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 26 6.9
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 26 6.9
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 26 6.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.1
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 256 bits (626), Expect = 3e-69
Identities = 125/216 (57%), Positives = 159/216 (73%), Gaps = 1/216 (0%)
Frame = +1
Query: 127 MDXAYXVIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 303
MD Y VIVLGTGL C+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L+A F
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59
Query: 304 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 483
E+ GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60 QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119
Query: 484 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXRN 663
++ EAL S LM +FEKRR + FL +V +++E+D T+KD + +M+S++ KFGL
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179
Query: 664 TQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDSL 771
TQDF GHA+ALYLDD YL++PA T RI LY+ S+
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSI 215
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 51.2 bits (117), Expect = 2e-07
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Frame = +1
Query: 136 AYXVIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAP 309
+Y VI++GT L+ ILS LS + ++VLHID N +YG S+T LE++ K
Sbjct: 6 SYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDS 65
Query: 310 DETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRY 420
+ + N DLIPK + A+ LVKLL T + +Y
Sbjct: 66 SQILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKY 125
Query: 421 LEFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKR---RFRNFLIYVQDFQEED- 585
L K + + KVP + + + + + KR RF F+ + D Q ++
Sbjct: 126 LLLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNL 185
Query: 586 AKTWK 600
K W+
Sbjct: 186 VKEWE 190
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 145 VIVLGTGLKXCILSGMLSVSGKKVLHIDRN 234
+I++G G+ C L L G+KVL ++R+
Sbjct: 8 IIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 205 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 375
GKK + +RN Y ++ PL K + P+ ++ + +D N D + L+ N
Sbjct: 2 GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 141 VCXIHYDSVKDQLDLTNY 88
VC YDSV+DQLD +Y
Sbjct: 144 VCSECYDSVQDQLDANDY 161
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 271 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 363
L L K A AP +TY + W +PKF
Sbjct: 32 LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 547 NFLIYVQDFQEEDAKTWKDFDPSTANM 627
N LIY+ + Q TWKD+DP++ M
Sbjct: 22 NELIYIDEEQ-----TWKDYDPNSLKM 43
>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 194 CRFLGRRFCTSIAISTTVVNLRQL 265
CR L R+F ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 148 IVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGES 255
IV+G GL + + G VL +D+N +GG S
Sbjct: 42 IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 301 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 411
P P + G + + V F++ANG L+K LIH +
Sbjct: 14 PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 6.9
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -1
Query: 528 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 349
K +HK+ ++S FL D + DF+ F+ I D + Q + R +F S + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429
Query: 348 V-NVPVSTSTVCFIRCRCVELSEQLL 274
+ VP ST IR ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 91 LLLKKCQNVGTENGKMSAIDDVAE*TIGR 5
+L+KK V NG++S I D AE G+
Sbjct: 367 ILIKKAYLVSCTNGRLSDIHDAAETVKGK 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,666
Number of Sequences: 5004
Number of extensions: 68093
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -