Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J23
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 322 2e-88
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 322 2e-88
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 322 2e-88
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 50 1e-06
AF024499-6|AAB70354.1| 560|Caenorhabditis elegans Hypothetical ... 29 3.7
U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical pr... 29 4.8
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 322 bits (790), Expect = 2e-88
Identities = 151/217 (69%), Positives = 171/217 (78%), Gaps = 2/217 (0%)
Frame = +1
Query: 127 MDXAYXVIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 306
MD Y IVLGTGLK CI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 307 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 480
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 481 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXR 660
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGL
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 661 NTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDSL 771
NT DFTGHALALY DD + QP + +I+LYSDSL
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSL 217
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 322 bits (790), Expect = 2e-88
Identities = 151/217 (69%), Positives = 171/217 (78%), Gaps = 2/217 (0%)
Frame = +1
Query: 127 MDXAYXVIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 306
MD Y IVLGTGLK CI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 307 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 480
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 481 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXR 660
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGL
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 661 NTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDSL 771
NT DFTGHALALY DD + QP + +I+LYSDSL
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSL 217
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 322 bits (790), Expect = 2e-88
Identities = 151/217 (69%), Positives = 171/217 (78%), Gaps = 2/217 (0%)
Frame = +1
Query: 127 MDXAYXVIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 306
MD Y IVLGTGLK CI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 307 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 480
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 481 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLXR 660
P D+ EALA+ LMGMFEKRRF+ FL++VQ F E TW+ DP + MQ +Y+KFGL
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQGLDPHNSTMQQVYEKFGLDE 180
Query: 661 NTQDFTGHALALYLDDNYLQQPAIXTIRRIKLYSDSL 771
NT DFTGHALALY DD + QP + +I+LYSDSL
Sbjct: 181 NTADFTGHALALYRDDEHKNQPYAPAVEKIRLYSDSL 217
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 145 VIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASIT 267
V+VLGTGL IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 11 VVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Frame = +1
Query: 331 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 495
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 496 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLXRNTQ 669
E S+ + + EKR F+ + + +D + + A+ ++ G+ + Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241
Query: 670 DF 675
F
Sbjct: 242 SF 243
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 145 VIVLGTGLKXCILSGMLSVSGKKVLHIDRNKYYGGESASIT 267
V+VLGTGL IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 11 VVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Frame = +1
Query: 331 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 495
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 496 EALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTAN--MQSLYDKFGLXRNTQ 669
E S+ + + EKR F+ + + +D + + A+ ++ G+ + Q
Sbjct: 182 EIFQSNALSILEKRALMKFITFCTQWSTKDTEEGRKLLAEHADRPFSEFLEQMGVGKTLQ 241
Query: 670 DF 675
F
Sbjct: 242 SF 243
>AF024499-6|AAB70354.1| 560|Caenorhabditis elegans Hypothetical
protein F42G2.2 protein.
Length = 560
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 716 K*LSSK*RARACPVKSWVFLXNPNLSYSD 630
K L++K R C + +W ++ +P+ SYSD
Sbjct: 269 KVLNNKRELRRCTMGNWFYIVHPDYSYSD 297
>U97007-7|AAB52292.1| 441|Caenorhabditis elegans Hypothetical
protein ZC196.3 protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 487 DQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP-STANMQSLYDKFGL 654
++KE +D + K+ + FL Y +DFQ A+ WK F + ++Q Y++ +
Sbjct: 253 EEKEEKVADWIQNCYKQPIKRFLEYFRDFQNV-AREWKYFKRLPSESLQDAYEEISI 308
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,081,946
Number of Sequences: 27780
Number of extensions: 383809
Number of successful extensions: 1026
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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