Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J20
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   169   5e-43
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   167   2e-42
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.12 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.38 
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   8.2  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  169 bits (410), Expect = 5e-43
 Identities = 84/134 (62%), Positives = 103/134 (76%), Gaps = 2/134 (1%)
 Frame = +2

Query: 323 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 502
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 503 WRVISSIEQKTE--GSERKQQMAKEYRVKVXKELXEICYDVLGLLDKHLIPKASNPXSKV 676
           WR+ISSIEQK E  G+ R+  + KEYR K+  EL +IC+DVL +L+KHLIP A+   SKV
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120

Query: 677 FYLKMKGDYYRYLA 718
           FY KMKGDYYRYLA
Sbjct: 121 FYYKMKGDYYRYLA 134


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  167 bits (405), Expect = 2e-42
 Identities = 81/133 (60%), Positives = 101/133 (75%), Gaps = 2/133 (1%)
 Frame = +2

Query: 326 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 505
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 506 RVISSIEQKTE--GSERKQQMAKEYRVKVXKELXEICYDVLGLLDKHLIPKASNPXSKVF 679
           R++SSIEQK E  G+  + ++ KEYR K+ +EL  IC D+L +L+KHLIP A++  SKVF
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122

Query: 680 YLKMKGDYYRYLA 718
           Y KMKGDYYRYLA
Sbjct: 123 YYKMKGDYYRYLA 135


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 326 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 496
           SV    + ++ K  ++ E + ++ + +K V+  ET  E+SN+E N LL + YK V     
Sbjct: 3   SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61

Query: 497 SSWRVIS 517
           S+W   S
Sbjct: 62  STWATFS 68


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 24/104 (23%), Positives = 42/104 (40%)
 Frame = +2

Query: 299  ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 478
            I S+  S  S   EEL+ R +     + Y+ MA  + E  E   ++ +    LLS  Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056

Query: 479  VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVXKELXEIC 610
                    +R+ + +E+          +  EY   + + L + C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 263 NKLTALRSFCIIQKYNDRLTKFRCVIQHRRSLLVEXYIY 147
           N LTA R FC +++  D +T F+ ++Q  ++ +   ++Y
Sbjct: 465 NLLTATRKFC-LERQKDDVT-FKVLLQSSKAPIARRFLY 501


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 258 TNCSAILLYNPKIQR*AHKIPM 193
           T C+A+LL NPKI+  + +I M
Sbjct: 198 TRCTALLLLNPKIRFTSKEISM 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,820
Number of Sequences: 5004
Number of extensions: 47518
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)