Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_F_J18
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 165 2e-41
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 116 2e-26
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 106 1e-23
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 102 3e-22
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 66 2e-11
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 37 0.012
03_06_0413 + 33756151-33756475,33756837-33756945,33757004-337570... 32 0.35
02_05_0128 - 26059348-26059437,26059553-26059759 31 0.61
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 28 5.7
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 7.5
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 165 bits (402), Expect = 2e-41
Identities = 77/174 (44%), Positives = 116/174 (66%), Gaps = 6/174 (3%)
Frame = +1
Query: 154 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 333
P ++ N +G+VLI+R+YRDD+G N VDAFR++++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYM 61
Query: 334 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 510
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 511 FGYPQNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRREGIXY 657
FGYPQN +LK +ITQ+G++S +SK + T QVTG +GWRREG+ Y
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMY 175
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 116 bits (278), Expect = 2e-26
Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 3/168 (1%)
Frame = +1
Query: 163 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVT-NIARTSFFHI 333
+ LF+ + KG VL+ R YR D+ + F ++ + SPV + A ++ I
Sbjct: 5 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTYMFI 64
Query: 334 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 513
+ N++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DF
Sbjct: 65 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 124
Query: 514 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIXY 657
GYPQ ++ +L FI + E + VT + WR EGI Y
Sbjct: 125 GYPQYTEAKILSEFIKTDAYR---MEVSQRPPMAVTNAVSWRSEGIRY 169
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 106 bits (255), Expect = 1e-23
Identities = 51/135 (37%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Frame = +1
Query: 163 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNI-ARTSFFHI 333
+ LF+ + KG VL+ R YR D+ + F ++ +V SPV + A S+ I
Sbjct: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMFI 65
Query: 334 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 513
+ N++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DF
Sbjct: 66 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 125
Query: 514 GYPQNSDTGVLKTFI 558
GYPQ ++ +L FI
Sbjct: 126 GYPQYTEAMILSEFI 140
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 102 bits (244), Expect = 3e-22
Identities = 47/141 (33%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Frame = +1
Query: 160 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF--RVNVIHARQQVRSP-VTNIARTSFFH 330
MI FV + +G+ ++ R YR ++ + + + F +V + + +P V N+ ++ H
Sbjct: 1 MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIH 60
Query: 331 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 510
+K A ++ T NV+ +++ E L +I V + Y G ++E++++ NF+L+YELLDE++D
Sbjct: 61 VKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVID 120
Query: 511 FGYPQNSDTGVLKTFITQQGI 573
FGYPQ + T VLK++I + I
Sbjct: 121 FGYPQTTSTEVLKSYIFNEPI 141
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 66.5 bits (155), Expect = 2e-11
Identities = 28/69 (40%), Positives = 46/69 (66%)
Frame = +1
Query: 373 NVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKT 552
+VN F+FL ++ DV+ Y G ++E+ IK+NFVL+Y++LDE++D G+P ++ +LK
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFPLTTEPNILKE 150
Query: 553 FITQQGIKS 579
I I S
Sbjct: 151 MIAPPNIVS 159
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = +1
Query: 340 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 519
A+++ N V E + ++V+ YFG + E ++ NF Y +LDEIL G
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAGE 233
Query: 520 PQNSDTGVLKTFITQQ 567
Q S + I Q
Sbjct: 234 LQESSKKNVARLIAAQ 249
>03_06_0413 +
33756151-33756475,33756837-33756945,33757004-33757058,
33757059-33757094,33757196-33757282,33757737-33757808
Length = 227
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 442 KISEENIKNNFVLIYELLDEILDFGYPQNSD-TGVLKTFITQQGIKSASKEEQAQI 606
++ E ++ NF Y +LDE+L G Q S+ VL+ TQ + A+KEE + +
Sbjct: 163 QVCELDLIFNFHKAYFILDEVLIAGELQESNKKAVLRLITTQDNLVEAAKEEASSL 218
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +1
Query: 136 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIAR 315
KE E +GGL + E I DD+G++ V++FR V + VR+ + N+ +
Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNLKK 86
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +1
Query: 340 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 507
A+++ + N + EF+ +++ M +FG + E +I + ++ +L+E++
Sbjct: 64 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 119
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +1
Query: 442 KISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVT 621
KI + + I EL+ + DF YP + T + S++ QI++++
Sbjct: 265 KIDNRPLSESLDEIKELIYDAEDFPYPGKGSSAAACTNPEESSASSSTPSYIQQISNRMN 324
Query: 622 GQIGWRREG 648
I W +G
Sbjct: 325 QNISWVMDG 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,835
Number of Sequences: 37544
Number of extensions: 365943
Number of successful extensions: 755
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -