Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J18
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 178 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 300
           V N+ G V    +  Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 369 LCDCCQPNICTLDMEERCACNVGN 298
           LC CC  + C  +M     C   N
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKCYN 769


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 387 GRVHILLCDCCQPNICTLDMEERCACNV 304
           G   I+ C  C PN CT      C   +
Sbjct: 420 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 447


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 387 GRVHILLCDCCQPNICTLDMEERCACNV 304
           G   I+ C  C PN CT      C   +
Sbjct: 406 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 433


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 387 GRVHILLCDCCQPNICTLDMEERCACNV 304
           G   I+ C  C PN CT      C   +
Sbjct: 440 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 467


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 387 GRVHILLCDCCQPNICTLDMEERCACNV 304
           G   I+ C  C PN CT      C   +
Sbjct: 389 GPNEIVTCTNCGPNPCTHTTTNGCTAEL 416


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 550 TFITQQGIKSASKEEQAQITSQVTGQIGWR 639
           T ++ QGI     E  ++++   T +  WR
Sbjct: 373 TKLSSQGILGEDVENNSEVSKSRTKESAWR 402


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 458 FSSEILPKYDC 426
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 458 FSSEILPKYDC 426
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 458 FSSEILPKYDC 426
           +S ++ PKYDC
Sbjct: 407 YSRDVRPKYDC 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,458
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)