Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J17
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   3.6  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    26   6.4  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   6.4  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   8.4  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 721 LEQLLTNCNNSLMEILVVSLLSDNHKHDKEIVWINEAFINVMLLKNQSC 867
           L+ L +N  NS+++ +   L S NH    + + ++EA I +  L +  C
Sbjct: 494 LDTLGSNIPNSMVDDIYTELSSKNHDDTSDSITVDEAVICLERLVDLVC 542


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +1

Query: 544 EIFDEDKLVECLSDIMLETASKRTLLDN------LPAHIPNCFLLELKSQIFLYNLSTTK 705
           +I D  K+   L+D+ +   S + + DN        +HIPN  L++L   I +++     
Sbjct: 325 KITDFSKIQHILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPA 384

Query: 706 DSKMFLEQL 732
           D  M + +L
Sbjct: 385 DLDMKISKL 393


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -1

Query: 715 FSNLWLWKDCTKKFDFLIL---VKNNLVC 638
           + N  +WK C + FDFL L   + N ++C
Sbjct: 131 YGNANVWKYCCQVFDFLTLAAVIDNKILC 159


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 409 LYNYDDKSCYVLKNCFADSTKAVLKKIIVSDCSINQIDISLN 534
           LY  D ++ Y LKNCF      ++  +  ++  IN+  I +N
Sbjct: 59  LYTTDTRTHYYLKNCFRILEWEIVSHVGGNELLINRRVIDVN 100


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 194 NNP*IQHTLNGSFGSDVSVILKVTFDILNCTQI*KIMFNFVSQFITNYKTEVTYT 30
           N P    +LN  F   + +  K+ +D LNC  I +   + +S+F+T +    TYT
Sbjct: 190 NGPQDAESLNSLF-QVILLECKLFYD-LNCQDIPEFFEDHMSEFMTAFLNYFTYT 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,613,828
Number of Sequences: 5004
Number of extensions: 73863
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)