Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J17
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0268 - 42411907-42411986,42412476-42412508,42413276-424133...    37   0.025
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    34   0.13 
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    30   2.2  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    29   6.7  
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    28   8.8  

>01_07_0268 -
           42411907-42411986,42412476-42412508,42413276-42413373,
           42413499-42413596
          Length = 102

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 121 KVTFKITLTSDPKLPFKV 174
           KV+FKI LTSDPKLPFKV
Sbjct: 16  KVSFKIILTSDPKLPFKV 33


>03_05_0432 -
           24231984-24233048,24233391-24235160,24235261-24236582,
           24236668-24237013
          Length = 1500

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +1

Query: 544 EIFDEDKLVECLSDIMLETASKRTLLDNLPAHIPNCFLLELKSQIFLYNLSTTKDSKMFL 723
           E+F E  LV+   D+  ETAS  T +DN P   P  FL  + +          +D++   
Sbjct: 67  EVFPEQVLVDLDDDLPAETASIETEMDN-PDMAP-YFLSFINASDSKKQAKDNQDNERLQ 124

Query: 724 EQLLT-NCNNSLMEILVVSLLSDNHKHDKEIVWINEA 831
           ++L + +  N  ++  + SLL   +K + E+V + EA
Sbjct: 125 KELESLSEENKDLKSRISSLLEQTNKAELEVVCLKEA 161


>09_06_0176 +
           21351884-21352693,21352821-21352976,21353425-21353613,
           21354741-21356354,21356446-21356553,21356649-21357509,
           21357586-21357632,21358591-21358697,21359512-21359630,
           21359706-21359915,21360412-21360693,21360820-21360952,
           21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -3

Query: 875 ETLQLWFFRSITFINASLIQTISLSCLWLSLNKLTTKISIRLLLQFVNNCSKNIFESLVV 696
           E L +W F S+T  ++SL     +SCL+ +  ++     + + L  VN       +SLV+
Sbjct: 164 ELLDVWTFYSVTISSSSLKHLRIVSCLFYNGFRINAPNLLTMCLDDVNVNGPLGHDSLVL 223

Query: 695 ERL 687
           E L
Sbjct: 224 ENL 226


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
 Frame = +1

Query: 265 VNLCQAENWPNNTTTDIELRNAFKIAQHIEKCLEKLQKRNLLNEFLSTLYNYDDKSCYVL 444
           +  C  ENWP +  +        K  + I  CLEK  +   +   + +L +Y+D+S +  
Sbjct: 89  IKFCVQENWPEDILS--------KALEDI--CLEKNYQEKCVLALVHSLQSYEDRSPH-R 137

Query: 445 KNCFADSTKAVLKK--IIVSDCSINQIDISLNIYIEIFDEDKLVE 573
           K+   D + +++ +  ++VS   +  + +S    + ++ + KL E
Sbjct: 138 KSKALDCSSSLMPRYQLMVSSVLLTTLPLSFPEILNVYFKKKLEE 182


>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 490 IVSDCSINQIDISLNIYIEIFDEDKLVECLSDIMLETASKR 612
           +V DC +  ++  L +Y    D+D  ++ LS+I +   SK+
Sbjct: 657 LVEDCKLQVVESCLTVYGSKDDDDLALKSLSNININDQSKQ 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,305,790
Number of Sequences: 37544
Number of extensions: 372473
Number of successful extensions: 976
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)