Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_F_J17
         (904 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    25   2.4  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   4.2  
AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    24   5.5  
AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    24   5.5  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    24   5.5  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.6  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   9.6  

>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 397 FLSTLYNYDDKSCYVLKNC 453
           FL  LY+YD++SC     C
Sbjct: 242 FLPELYSYDEQSCIECAEC 260


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 559 DKLVECLSDIMLETASKRTLLDNLPAHIPNCFLLELKSQIFLYNLSTTKDS 711
           D+  +C S  M +T +    L N PA   N     + S+I L  L+  K S
Sbjct: 506 DRFADCFSPAMNDTDTIDAALVNTPAGAINMSTPFIDSEIVLSALAQLKPS 556


>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 749 LLQFVNNCSKNIFESLVVERLY 684
           L+QFV++C K+I   L V+ +Y
Sbjct: 48  LMQFVSSCHKSIDARLQVDVIY 69


>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 749 LLQFVNNCSKNIFESLVVERLY 684
           L+QFV++C K+I   L V+ +Y
Sbjct: 48  LMQFVSSCHKSIDARLQVDVIY 69


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 749 LLQFVNNCSKNIFESLVVERLY 684
           L+QFV++C K+I   L V+ +Y
Sbjct: 48  LMQFVSSCHKSIDARLQVDVIY 69


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 585 HYARNSIKTHIARQLAGSHTKLFF 656
           HY +   K H+ R    SHT L F
Sbjct: 648 HYVQQEDKVHLKRITQQSHTALEF 671


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 585 HYARNSIKTHIARQLAGSHTKLFF 656
           HY +   K H+ R    SHT L F
Sbjct: 649 HYVQQEDKVHLKRITQQSHTALEF 672


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,351
Number of Sequences: 2352
Number of extensions: 18610
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97574436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)